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从细胞色素b 基因全序列分析岩羊和山羊、绵羊的系统发生关系

曹丽荣  王小明  饶刚  万秋红  方盛国   

  1. 华东师范大学生命科学学院
  • 出版日期:2005-07-14 发布日期:2008-07-07

The Phylogenetic Relationship among Goat , Sheep and Bharal Based on Mitochondrial Cytochrome b Gene Sequences

CAO Lirong WANG Xiaoming RAO Gang WAN Qiuhong FANG Shengguo   

  • Online:2005-07-14 Published:2008-07-07

摘要: 本文测定了来自四川和青海岩羊的细胞色素b 基因全序列(1 140 bp) , 结合从GenBank 中检索获得的山羊、北山羊、绵羊和盘羊4 个近缘种细胞色素b 核苷酸同源区序列进行比较, 分析了碱基组成和变异情况以及核苷酸序列差异。分别采用简约法和距离矩阵法构建分子系统树, 得到了基本相同的拓扑结构, 从分子水平初步探讨了岩羊的系统起源问题。岩羊与山羊属的山羊、北山羊有着比绵羊属的绵羊、盘羊更近的亲缘关系。岩羊与山羊、北山羊的分歧时间大约在3~6 百万年, 而与盘羊、绵羊的分歧时间大约在6~8 百万年。

关键词: 岩羊, 细胞色素b , 系统起源

Abstract: The blue sheep ( Pseudois nayaur) is a species currently listed as Endangered by IUCN and is registered in the state key protected wildlife list as a Category Ⅱspecies. It is widely distributed in most areas of Southwestern and Northwestern China. There has been no previous molecular examination of the phylogenetic origin of the blue sheep and our research results provide the first preliminary information and molecular perspectives on this problem. mtDNA Cyt b gene was used as genetic marker. Total DNA from three dried skin samples of bharal from Sichuan and Qinghai province in China were extracted and sequenced , and deposited in GenBank ( accession number : AF473606 , AF473607 , AF473608). These complete cyt b gene sequences (1 140 bp) , together with those sequences from goat ( Capra hircus) , ibex ( Capra ibex) , sheep ( Ovis aries) and argali ( Ovis ammon) in the family Bovidae which were obtained from GenBank , were aligned with the MegAlign software. By pairwise comparison , their Kimura 2-parameter distances and base substitutions were analyzed with MEGA software and the percentage differences among them were calculated with Dnastar software. According to two Cyt b molecular clocks , the time when different species began to evolve divergently was estimated. The phylogenetic trees constructed by two methods ( NJ and MP) supported almost the same topology.
Our molecular results showed that the mean sequence difference between blue sheep and the genus Capra (9.67 %) is significantly lower than that between blue sheep and the genus Ovis (11.78 %) . Sequence comparisons showed that the blue sheep is similar to the genus Capra. The phylogenetic analysis revealed that the blue sheep is more closely related to the monophylogeny of the genus Capra than to that of the genus Ovis. The approximate divergent time between bharal and the genus Capra is 3 - 6 Myr , whereas that between bharal and the genus Ovis is 6 - 8 Myr. The primitive-type karyotype is similarly maintained in Capra. A similar chromosomal complement of 2n = 60 is shared by the ibex and the goat. The diploid numbers of the chromosomes of the genus Ovis are 52 , 54 , 56 , 58 and that of blue sheep is 56. Therefore , we propose that blue sheep originated 3 - 6 million years ago when it split up from the genus Capra and developed separately. Further researches are needed in the future by being combined with the fossil records , the characteristics of morphology , behavior biology , and cytogenetics.

Key words: Blue sheep ( Pseudois nayaur), Cytochrome b, Phylogeny