不同性别藏羚肠道菌群分析
收稿日期: 2024-08-28
录用日期: 2025-02-20
网络出版日期: 2025-02-20
基金资助
国家自然科学基金面上项目(31872213)
Effect of sex on the gut microbiota of Tibetan antelopes
Received date: 2024-08-28
Accepted date: 2025-02-20
Online published: 2025-02-20
肠道菌群在宿主的生理稳态中起着至关重要的作用,受多种因素的影响。本研究运用16S rDNA高通量测序和生物信息学方法对雄性和雌性藏羚(Pantholops hodgsonii)肠道菌群组成及多样性进行分析。结果表明:雌性藏羚获得6 896个OTUs,雄性藏羚获得5 609个OTUs,二者共有2 650个OTUs。在α多样性分析中雌性藏羚的肠道菌群丰富度显著高于雄性藏羚(P < 0.05)。厚壁菌门(Firmicutes)和拟杆菌门(Bacteroidota)为雌雄性藏羚优势菌门。气单胞菌属(Aeromonas)、假单胞菌属(Pseudomonas)、甲基杆菌属(Methylobacterium)等12个菌属在雄性藏羚肠道中的丰度显著高于雌性(P < 0.05),而Ruminococcaceae_UCG、阿克曼氏菌属(Akkermansia)、消化球菌属(Peptococcus)等16个菌属在雌性藏羚肠道中的丰度显著高于雄性(P < 0.05)。主坐标分析两组之间的群落结构组成存在明显分离,雌性的样本重复性好于雄性。菌群功能预测分析发现,藏羚肠道微生物群主要参与碳水化合物代谢、氨基酸代谢、辅酶因子和维生素代谢、萜类和多酮类代谢,此外,未发现雌性和雄性之间有显著差异的代谢通路。本研究探讨了藏羚肠道微生物组成与性别的关系,为深入理解藏羚对高原极端环境的适应性进化机制提供了参考。
孙雨婷 , 杨东东 , 李印虎 , 巩匆然 , 胡罕 , 苏丽娜 , 李佩韦 , 刘艳 , 张洪锋 , 吴晓民 . 不同性别藏羚肠道菌群分析[J]. 兽类学报, 2026 , 46(2) : 278 -286 . DOI: 10.16829/j.slxb.151006
Gut microbiota plays a crucial role in host physiological homeostasis and is influenced by many factors. We employed high-throughput sequencing of the 16S rDNA and bioinformatic analysis to investigate the composition and abundance of the gut microbiota of male and female Tibetan antelopes (Pantholops hodgsonii).The results showed that 6 896 OTUs were obtained from female, 5 609 OTUs from male, and 2 650 OTUs were shared between male and female. Female Tibetan antelopes had a higher bacterial richness than males (P < 0.05). Firmicutes and Bacteroidota were the predominant phyla in the microbial community. At the genus level, the relative abundance of 12 genera, including Aeromonas, Pseudomonas,and Methylobacterium, in the intestinal tract of male Tibetan antelope was significantly higher than that of female (P < 0.05). The relative abundance of 16 bacteria genera, including Ruminococcaceae_UCG, Akkermansia, and Peptococcus, in the intestinal tract of female Tibetan antelope was significantly higher than that of male (P < 0.05). Principal coordinate analysis revealed a significant difference in the structure of the intestinal flora between the two groups, and the reproducibility of female samples was better than that of male samples. Functional prediction analyses revealed that the gut microbiota of Tibetan antelopes was mainly involved in carbohydrate metabolism, amino acid metabolism, metabolism of cofactors and vitamins, metabolism of terpenoids and polyketides, and no significant differences in metabolic pathways were found between females and males. This study explored associations between sex of the host and their gut microbiota, which may provide a reference for further understanding of the adaptive evolutionary mechanism of Tibetan antelopes to extreme high-altitude environments.
| B?ckhed F, Ley R E, Sonnenburg J L, Peterson D A, Gordon J I,2005.Host?bacterial mutualism in the human intestine[J]. Science,307(5717):1915-1920.DOI:10.1126/science. 1104816 . | |
| Bolnick D I, Snowberg L K, Hirsch P E, Lauber C L, Org E, Parks B, Lusis A J, Knight R, Caporaso J G, Svanb?ck R,2014.Individual diet has sex?dependent effects on vertebrate gut microbiota[J]. Nature Communications,5:4500.DOI: 10.1038/ncomms5500 . | |
| Cabral L, Persinoti G F, Paix?o D A A, Martins M P, Morais M A B, Chinaglia M, Domingues M N, Sforca M L, Pirolla R A S, Generoso W C, Santos CA, Maciel L F, Terrapon N, Lombard V, Henrissat B, Murakami M T,2022. Gut microbiome of the largest living rodent harbors unprecedented enzymatic systems to degrade plant polysaccharides[J].Nature Communications,13(1):629.DOI:10.1038/s41467-022-28310-y . | |
| Chu D M, Meyer K M, Prince A L, Aagaard K M,2016. Impact of maternal nutrition in pregnancy and lactation on offspring gut microbial composition and function[J].Gut Microbes,7(6):459?470.DOI:10.1080/19490976.2017.1308719 . | |
| Daly K, Proudman C J, Duncan S H, Flint H J, Dyer J, Shirazi?Beechey S P,2012.Alterations in microbiota and fermentation products in equine large intestine in response to dietary variation and intestinal disease[J]. The British Journal of Nutrition,107(7):989?995.DOI:10.1017/S0007114511003825 . | |
| De Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, Poullet J B, Massart S, Collini S, Pieraccini G, Lionetti P,2010.Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa[J].Proceedings of the National Academy of Sciences of the United States of America,107(33):14691?14696.DOI:10.1073/pnas. 1005963107 . | |
| Dillon R J, Vennard C T, Buckling A, Charnley A K,2005. Diversity of locust gut bacteria protects against pathogen invasion[J].Ecology Letters,8(12):1291?1298.DOI:10.1111/j. 1461-0248.2005.00828.x . | |
| Ding Yun, Wu Qi, Hu Yibo, Wang Xiao, Nie Yonggang, Wu Xiaoping, Wei Fuwen,2017.Advances and prospects of gut microbiome in wild mammals[J]. Acta Theriologica Sinica,37 (4):399?406. DOI:10. 16829 /j.slxb.201704010. (in Chinese with English abstract) | |
| Ezenwa V O, Gerardo N M, Inouye D W, Medina M, Xavier J B. 2012. Microbiology. Animal behavior and the microbiome[J]. Science,338(6104):198?199.DOI:10.1126/science. 1227412 . | |
| Fan C, Zhang L, Jia S, Tang X, Fu H, Li W, Liu C, Zhang H, Cheng Q, Zhang Y,2022.Seasonal variations in the composition and functional profiles of gut microbiota reflect dietary changes in plateau pikas[J].Integrative Zoology,17(3):379?395.DOI:10.1111/1749-4877.12630 . | |
| Ge R L, Cai Q L, Shen Y Y, San A, Ma L, Zhang Y, Yi X, Chen Y, Yang L F, Huang Y, He R J, Hui Y Y, Hao M R, Li Y, Wang B, Ou X H, Xu J, Zhang Y F, Wu K, Geng C Y, Zhou W P, Zhou T C, Irwin D M, Yang Y Z, Ying L, Bao H H, Kim J, Larkin D M, Ma J, Lewin H A, Xing J C, Platt R N, Ray D A, Auvil L, Capitanu B, Zhang X F, Zhang G J, Murphy R W, Wang J, Zhang Y P, Wang J,2013. Draft genome sequence of the Tibetan antelope[J].Nature Communications,4:1858.DOI:10.1038/ncomms2860 . | |
| Greene L K, Andriambeloson J B, Rasoanaivo H A, Yoder A D, Blanco M B,2022. Variation in gut microbiome structure across the annual hibernation cycle in a wild primate[J].FEMS microbiology Ecology,98(7):fiac070.DOI:10.1093/femsec/fiac070 . | |
| Guo Qiuyan,2023. Sex,age,and seasonal differences of gut bacteria in wild whiteheaded langur(Trachypithecus leucocephalus)[D].Guilin:Guangxi Normal University.DOI:10.27036/d.cnki.ggxsu.2023.000394. (in Chinese with English abstract) | |
| Guo Shihui, Yu Yongtao, Wan Jiahong, Mao Yanni, Zhang Haodong, Zhang Jinshen, Tian Xinyue, Zhao Qingmei,2022. Progress in research on the relationship between Proteobacteria and the imbalance of mammalian colonic intestinal flora[J].Chinese Journal of Microecology,34(4):479?484.DOI:10.13381/j.cnki.cjm.202204021. (in Chinese with English abstract) | |
| Huang G P, Wang X, Hu Y B, Wu Q, Nie Y G, Dong J H, Ding Y, Yan L, Wei F W,2021. Diet drives convergent evolution of gut micro?biomes in bamboo?eating species[J]. Science China?Life Sciences,60(1):88?95. DOI:10.1007/s11427-020-1750-7 . | |
| Hsiao E Y, McBride S W, Hsien S, Sharon G, Hyde E R, McCue T, Codelli J A, Chow J, Reisman S E, Petrosino J F, Patterson P H, Mazmanian S K,2013. Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders[J].Cell,155(7):1451?1463.DOI:10.1016/j.cell.2013.11.024 . | |
| Ley R E, Hamady M, Lozupone C, Turnbaugh P J, Ramey R R, Bircher J S, Schlegel M L, Tucker T A, Schrenzel M D, Knight R, Gordon J I,2008. Evolution of mammals and their gut microbes[J].Science,320(5883):1647?1651.DOI:10.1126/science.1155725 . | |
| Li Shijie, Zhang Jinhui, Wang Yingmin, Li Manman, Zhao Hang, Wang Rongjun, Li Junqiang, Li Xiaoying, Xu Huiyan, Jian Fuchun,2024. Analysis of intestinal flora early colonizing in Hu?sheep of different genders[J].Journal of Henan Agricultural University,58(2):249?258.DOI:10.16445/j.cnki. 1000-2340.20231120.001. (in Chinese with English abstract) | |
| Li Y M, Hu X L, Yang S, Zhou J T, Zhang T X, Qi L, Sun X N, Fan M Y, Xu S H, Cha M, Zhang M S, Lin S B, Liu S Q, Hu D F,2017.Comparative analysis of the gut microbiota composition between captive and wild forest musk deer[J].Frontiers in Microbiology,8:1705.DOI:10.3389/fmicb.2017.01705 . | |
| Liu H, Zhao X, Xu S, Zhao L, Han X, Xu X, Zhao N, Hu L, Luo C, Wang X, Zhang Q, Guo T,2024.Multi?omics reveal the gut microbiota?mediated severe foraging environment adaption of small wild ruminants in the Three?River?Source National Park,China[J].Integrative Zoology,20(5):916?935.DOI:10.1111/1749-4877.12830 . | |
| Liu Zhanying,2008.Isolation and Identification of major cellulolytic bacteria in rumen of sheep and effects of nitrogen sources on their cellulolytic activities[D]. Hohhot:Inner Mongolia Agricultural Universit.(in Chinese) | |
| Maslowski K M, Mackay C R,2011.Diet,gut microbiota and immune responses[J].Nature Immunology,12(1):5?9.DOI:10.1038/ni0111-5 . | |
| Nuriel?Ohayon M, Neuman H, Koren O,2016.Microbial changes during pregnancy,birth,and infancy[J].Frontiers in Microbiology,7:1031.DOI:10.3389/fmicb.2016.01031 . | |
| Pandya P R, Singh K M, Parnerkar S, Tripathi A K, Mehta H H,2010.Bacterial diversity in the rumen of Indian Surti buffalo(Bubalus bubalis),assessed by 16S rDNA analysis[J].Journal of Applied Genetics,51(3):395?402.DOI:10.1007/BF03208869 . | |
| Rusconi B, Good M, Warner B B,2017. The microbiome and biomarkers for necrotizing enterocolitis:Are we any closer to prediction?[J].The Journal of Pediatrics,189:40?47.DOI:10.1016/j.jpeds.2017.05.075 . | |
| Segata N, Izard J, Waldron L, Gevers D, Miropolsky L, Garrett W S, Huttenhower C,2011. Metagenomic biomarker discovery and explanation[J].Genome Biology,12(6):R60.DOI:10.1186/gb-2011-12-6-r60 . | |
| Shi Y, Miao Z Y, Su J P, Wasser S K,2021. Shift of maternal gut microbiota of Tibetan antelope(Pantholops hodgsonii) during the periparturition period[J].Current Microbiology,78(2):727?738.DOI:10.1007/s00284-020-02339-y . | |
| Sun Y G, Zhang S S, Nie Q X, He H J, Tan H Z, Geng F, Ji H H, Hu J L, Nie S P,2022. Gut firmicutes:relationship with dietary fiber and role in host homeostasis[J].Critical Reviews in Food Science and Nutrition,63(33):12073?12088.DOI:10.1080/10408398.2022.2098249 . | |
| Tian Chen,2022. Study on the gut microbiome of high altitude adaptation of Pantholops hodgsonii [D].Kunming:Yunnan University.DOI:10.27456/d.cnki.gyndu.2022.002862. (in Chinese with English abstract) | |
| Waite D W, Taylor M W,2014. Characterizing the avian gut microbiota:membership,driving influences,and potential function[J].Frontiers in Public Healthl,5:223.DOI:10.3389/fmicb.2014.00223 . | |
| Wang X, Zhang Y, Wen Q, Wang Y, Wang Z, Tan Z, Wu K,2020. Sex differences in intestinal microbial composition and function of Hainan special wild boar[J].Animals(Basel),10(9):1553.DOI:10.3390/ani10091553 . | |
| Yang Hong,2019. The gut microflora structure of giant pandas viewed across gender[D].Nanchong:China West Normal University.(in Chinese with English abstract) | |
| Zhang J, Gao H, Jiang F, Liu D, Hou Y, Chi X, Qin W, Song P, Cai Z, Zhang T,2022. Comparative analysis of gut microbial composition and functions in Przewalski’s gazelle(Procapra przewalskii) from various habitats[J].Frontiers in Microbiology,13:913358.DOI:10.3389/fmicb.2022.913358 . | |
| Zhao Guijun, Hang Jie, Zhu Jibin, Zheng Chengli, Zeng Dejun, Zhang Chenglu, Qi Wenhua, Feng Xiaolan,2019. Study on fecal bacterial microbiota of captive musk deer in different gender[J].Southwest China Journal of Agricultural Sciences,32(7):1652?1658,1687.DOI:10.16213/j.cnki.scjas. 2019.7.031. (in Chinese with English abstract) | |
| Zhao H, Jiang F, Gu H, Gao H, Zhang J, Zhang M, Zhang T,2023.Seasonal variation of gut microbial composition and metabolism in Tibetan antelopes in Hoh Xil National Nature Reserve[J].Animals(Basel),13(22):3569.DOI:10.3390/ani13223569 . | |
| Zhao J, Ding X, Men G,2020. Sex differences in resting state network(RSN) functional connections with mild cognitive impairment(MCI) progression[J].Neuroscience Letters,724:134891.DOI:10.1016/j.neulet.2020.134891 . | |
| Zhou K Q,2017. Strategies to promote abundance of Akkermansia muciniphila,an emerging probiotics in the gut,evidence from dietary intervention studies[J].Journal of Functional Foods,33:194?201.DOI:10.1016/j.jff.2017.03.045 . | |
| 丁赟,吴琦,胡义波,王潇,聂永刚,吴小平,魏辅文,2017.野生哺乳动物肠道微生物组研究进展与展望[J]. 兽类学报,37(4):399?406. DOI:10.16829 /j.slxb. 201704010 . | |
| 田晨,2022.藏羚羊高海拔适应的肠道微生物组研究[D].昆明:云南大学.DOI:10.27456/d.cnki.gyndu.2022.002862 . | |
| 刘占英,2008.绵羊瘤胃主要纤维降解细菌的分离鉴定及不同氮源对其纤维降解能力的影响[D].呼和浩特:内蒙古农业大学. | |
| 李世杰,张金辉,王英民,李嫚嫚,赵航,王荣军,李俊强,李晓迎,许会艳,菅复春,2024.不同性别湖羊早期定植肠道菌群分析[J].河南农业大学学报,58(2):249?258.DOI:10.16445/j.cnki.1000-2340.20231120.001 . | |
| 杨宏,2019.不同性别大熊猫肠道微生物群落结构研究[D].南充:西华师范大学. | |
| 赵贵军,竭航,朱吉彬,郑程莉,曾德军,张承露,封孝兰,2019.圈养不同性别林麝粪便菌群多样性研究[J].西南农业学报,32(7):1652?1658,1687.DOI:10.16213/j.cnki.scjas.2019.7.031 . | |
| 郭仕辉,余永涛,万佳宏,毛彦妮,张浩东,张津慎,田新岳,赵清梅,2022.变形菌门与哺乳动物结肠肠道菌群失调相关研究进展[J].中国微生态学杂志,34(4):479?484.DOI:10.13381/j.cnki.cjm.202204021 . | |
| 郭秋艳,2023. 野生白头叶猴肠道微生物的性别、年龄和季节性差异[D].桂林:广西师范大学.DOI:10.27036/d.cnki.ggxsu.2023.000394 . |
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