塔里木马鹿PRDX1基因表达载体的构建及其生物信息学分析
收稿日期: 2024-11-06
录用日期: 2025-04-18
网络出版日期: 2025-04-18
基金资助
新疆和田学院校级科研培育项目(2025ZR008);新疆维吾尔自治区自然科学基金(2022D01B40)
Construction of the expression vector for the PRDX1 gene in Tarim red deer and its bioinformatic analysis
Received date: 2024-11-06
Accepted date: 2025-04-18
Online published: 2025-04-18
为研究塔里木马鹿(Cervus elaphus yarkandensis)干旱环境适应中可能具有抗氧化功能的过氧化物还原酶1(Peroxiredoxins 1,PRDX1)的结构与功能特征,本研究通过逆转录PCR技术(RT‑PCR)扩增获取塔里木马鹿PRDX1(CeyPRDX1)基因的编码序列(CDS),使用同源重组法将其与pcDNA3.1(+) 载体相连接,并构建其真核表达载体,命名为pcDNA3.1(+)‑CeyPRDX1;利用具有EGFP荧光标签的pLJM1‑EGFP慢病毒骨架载体构建慢病毒过表达载体(pLJM1‑CeyPRDX1‑EGFP),并感染人永生化角质形成细胞株HaCaT后检测其亚细胞定位。对CeyPRDX1与其他哺乳动物的PRDX1基因序列进行对位排列,构建系统进化树;利用生物信息学方法对CeyPRDX1蛋白理化性质、跨膜结构、修饰位点和亚细胞定位等进行分析。结果显示,CeyPRDX1基因的CDS序列为729 bp,成功构建其真核表达载体和慢病毒过表达载体;亚细胞定位显示,CeyPRDX1定位于细胞质和细胞核中。对外排列和系统进化树分析结果显示,CeyPRDX1与东欧马鹿(Cervus elaphus)以及马鹿(Cervus canadensis)的同源性最高,亲缘关系最近。生物信息学分析结果显示,CeyPRDX1是高度保守的不稳定蛋白,没有N‑糖基化位点和跨膜区,其蛋白与多种抗氧化相关蛋白之间存在相互作用。本研究结果为后续CeyPRDX1基因的功能研究奠定了基础。
布威海丽且姆·阿巴拜科日 , 艾比布拉·阿布都拉 , 布海力切木·依明艾力 , 赵华斌 . 塔里木马鹿PRDX1基因表达载体的构建及其生物信息学分析[J]. 兽类学报, 2026 , 46(2) : 153 -170 . DOI: 10.16829/j.slxb.151026
To investigate the structural and functional characteristics of Peroxiredoxin 1 (PRDX1),which may play an antioxidant role in the adaptation of the Tarim red deer (Cervus elaphus yarkandensis) to arid environments, this study amplified the coding sequence (CDS) of the PRDX1 gene (CeyPRDX1) using reverse transcription PCR (RT-PCR). The CDS sequence was successfully cloned into the pcDNA3.1 (+) vector to construct an expression vector and named pcDNA3.1 (+) -CeyPRDX1. The pLJM1-EGFP Lentivirus vector with EGFP fluorescent label was used to construct overexpression vector of CeyPRDX1 (pLJM1-CeyPRDX1-EGFP), and its subcellular localization was observed in the cytoplasm and nucleus of human HaCaT cells. The results of homology comparison and phylogenetic tree analysis indicated that CeyPRDX1 has the highest homology and the closest phylogenetic relationship with Eastern European red deer (Cervus elaphus) and red deer (Cervus canadensis). Bioinformatic analysis revealed that CeyPRDX1 is a conserved, hydrophilic protein without N-glycosylation or transmembrane regions, and interacts with various antioxidant proteins. This study provides a foundation for future functional research on the CeyPRDX1 gene.
Key words: Tarim red deer; PRDX1; Vector construction; Bioinformatic analysis
| Arash O, Saeed N, Mehdi R, Zare N,2023. Heat?shock proteins,oxidative stress,and antioxidants in one?humped camels[J]. Tropical Animal Health and Production,56(1):29. DOI:10.1007/S11250-023-03876-X . | |
| Ababaikeri B, Abduriyim S, Tohetahong Y, Mamat T, Ahmat A, Halik M,2020. Whole?genome sequencing of Tarim red deer(Cervus elaphus yarkandensis)reveals demographic history and adaptations to an arid?desert environment[J]. Frontiers in Zoology,17:31. DOI:10.1186/s12983-020-00379-5 . | |
| Ababaikeri B, Zhang Y C, Dai H Y, Shan W J,2021. Revealing the coexistence of differentiation and communication in an endemic hare,Lepus yarkandensis(Mammalia,Leporidae)using specific?length amplified fragment sequencing[J].Frontiers in Zoology,18:50. DOI:10.1186/s12983-021-00432-x . | |
| Abbas M N, Gul I, Khosravi Z, Amarchi J I, Ye X, Yu L, Wu S Y, Cui H J,2024. Molecular characterization,immune functions and DNA protective effects of peroxiredoxin?1 gene in Antheraea pernyi [J]. Molecular Immunology,170:76?87.DOI:10.1016/j.molimm.2024.04.006 . | |
| Bai Xinfu, Zhu Jianjun, Wang Zhongli, Tan Yongqin, Liu Linde,2012. Relationship between the salt accumulation and the drought resistance in several woody plants in arid zone[J].Scientia Silvae Sinicae,48(7):45?49.(in Chinese with English abstract) | |
| Babusiak M, Man P, Sutak R, Petrak J, Vyoral D,2005. Identification of heme binding protein complexes in murine erythroleukemic cells:Study by a novel two?dimensional native separation liquid chromatography and electrophoresis[J].Proteomics,5:340?350.DOI:10.1002/pmic.200400935 . | |
| Canat A, Atilla D, Torres?Padilla M,2023. Hyperosmotic stress induces 2?cell?like cells through ROS and ATR signaling[J]. EMBO Reports,24(9):e56194. DOI:10.15252/EMBR. 202256194 . | |
| Coffin R S, Thomas S K, Thomas N S B, Lilley C E, Pizzey A R, Griffiths C H, Gibb B J, Wagstaff M J, Inges S J, Binks M H, Chain B M, Thrasher A J, Rutault K, Latchman D S,1998. Pure populations of transduced primary human cells can be produced using GFP expressing herpes virus vectors and flow cytometry[J].Gene Therapy,5(5):718?722. DOI:10.1038/sj.gt.3300634 . | |
| Cha M K, Yun C H, Kim I H,2000. Interaction of human thiol?specific antioxidant protein 1 with erythrocyte plasma membrane[J].Biochemistry,39:6944?6950.DOI:10.1021/bi000034j . | |
| Flohé L, Budde H, Bruns K, Castro H, Clos J, Hofmann B, Kansal?Kalavar S, Krumme D, Menge U, Plank?Schumacher K, Sztajer H, Wissing J, Wylegalla C, Hecht H J,2002. Tryparedoxin peroxidase of leishmania donovani:molecular cloning,heterologous expression,specificity,and catalytic mechanism[J].Archives of Biochemistry and Biophysics,397(2):324?335.DOI:10.1006/abbi.2002.2806 . | |
| Gerdes H H, Kaether C,1996.Green fluorescent protein:applications in cell biology[J].FEBS Letters,389(1):44?47.DOI:10.1016/0014-5793(96)00586-8 . | |
| Ghasemi A, Shadi A,2024. Combined effects of microplastics and benzo[a] pyrene on Asian sea bass Lates calcarifer growth and expression of functional genes[J].Comparative Biochemistry and Physiology Part C:Toxicology & Pharmacology,283:109966. DOI:10.1016/j.cbpc.2024.109966 . | |
| Gutierrez?Guerrero A, Cosset F L, Verhoeyen E,2020. Lentiviral vector pseudotypes:precious tools to improve gene modification of hematopoietic cells for research and gene therapy[J].Viruses,12(9):1016. DOI:10.3390/v12091016 . | |
| Guan X, Ruan Y Y, Che X X, Feng W W,2024. Dual role of PRDX1 in redox?regulation and tumorigenesis:past and future [J].Free Radical Biology and Medicine,210:120?129.DOI:10.1016/j.freeradbiomed.2023.11.009 . | |
| Hassan H A, Ahmed H S, Hassan D F,2024. Free radicals and oxidative stress:mechanisms and therapeutic targets[J].Human Antibodies,32(4):151?167.DOI:10.3233/HAB-240011 . | |
| Hart K L, Liu B, Brown D, Campo?Fernandez B, Tam K, Orr K, Hollis R P, Brendel C, Williams D A, Kohn D B,2024. A novel high?titer,bifunctional lentiviral vector for autologous hematopoietic stem cell gene therapy of sickle cell disease[J].Molecular Therapy:Methods & Clinical Developmen,32(2):101254. DOI:10.1016/J.OMTM.2024.101254 . | |
| J?Nsson T J, Johnson L C, Lowther W T,2008. Structure of the sulphiredoxin?peroxiredoxin complex reveals an essential repair embrace[J].Nature,451(7174):98?101.DOI:10.1038/nature06415 . | |
| Liu X F, Li Z H, Yan Y B, Li Y, Wu H, Pei J, Yan P, Yang R L, Guo X, Lan X Y,2021. Selection and introgression facilitated the adaptation of Chinese native endangered cattle in extreme environments[J].Evolutionary Applications,14(1):860?873.DOI:10.1111/eva.13168 . | |
| Liu S Q, Guo C M, Wu D C, Ren Y X, Sun M Z, Xu P,2012. Protein indicators for HaCaT cell damage induced by UVB irradiation[J].Journal of Photochemistry and Photobiology B?biology,114:94?101.DOI:10.1016/j.jphotobiol.2012.05.015 . | |
| Melvin Z E, Dhirani H, Mitchell C, Davenport T R, Blount J D, Georgiev A V,2022. Methodological confounds of measuring urinary oxidative stress in wild animals[J].Ecology and Evolution,12(7):e9115. DOI:10.1002/ECE3.9115 . | |
| Montemartini M, Kalisz H M, Hecht H J, Steinert P, Flohé L,1999. Activation of active?site cysteine residues in the peroxiredoxin?type tryparedoxin peroxidase of Crithidia fasciculate [J].European Journal of Biochemistry,264(2):516?524.DOI:10.1046/j.1432-1327.1999.00656.x . | |
| Mwacharo J M, Kim E S, Elbeltagy A R, Aboul?Naga A M, Rischkowsky B A, Rothschild M F,2017. Genomic footprints of dryland stress adaptation in Egyptian fat?tail sheep and their divergence from East African and western Asia cohorts[J].Scientific Reports,7:17647. DOI:10.1038/S41598-017-17775-3 . | |
| Neumann C A, Cao J X, Manevich Y,2009. Peroxiredoxin 1 and its role in cell signaling[J].Cell Cycle,8(24):4072?4078. DOI:10.4161/cc.8.24.10242 . | |
| Neumann C A, Fang Q,2007. Are peroxiredoxins tumor suppressors?[J].Current Opinion in Pharmacology,7(4):375?380. | |
| Omidi A, Nazifi S, Rasekh M, Zare N,2023. Heat?shock proteins,oxidative stress,and antioxidants in one?humped camels [J].Tropical Animal Health and Production,56(1):29.DOI:10.1007/S11250-023-03876-X . | |
| Perry C, Rayat A C M E,2021. Lentiviral vector bioprocessing[J].Viruses,13(2):268. DOI:10.3390/V13020268 . | |
| Ritchie D J, Friesen C R,2022. Invited review:thermal effects on oxidative stress in vertebrate ectotherms[J].Comparative Biochemistry and Physiology Part A:Molecular and Integrative Physiology,263:111082.DOI:10.1016/J.CBPA. 2021.111082 . | |
| Rodrigo D C G, Udayantha H M V, Omeka W K M, Liyanage D S, Dilshan M A H, Hanchapola H A C R, Kodagoda Y K, Lee J, Lee S, Jeong T, Wan Q, Lee J,2024. Molecular characterization,cytoprotective,DNA protective,and immunological assessment of peroxiredoxin?1(Prdx1)from yellowtail clownfish(Amphiprion clarkii)[J].Developmental and Comparative Immunology,156:105175.DOI:10.1016/J.DCI.2024.105175 . | |
| Saleem K, Asghar M A, Raza A, Pan K W, Ullah A, Javed H H, Seleiman M F, Imran S, Nadeem S M, Khan K S, Du J B, Xu F, Kocsy G, Siddique K H M, Riaz A,2024. Alleviating drought stress in strawberry plants:unraveling the role of paclobutrazol as a growth regulator and reducer of oxidative stress induced by reactive oxygen and carbonyl species[J].Journal of Plant Growth Regulation,43(9):3238?3253.DOI:10.1007/s00344-023-11120-x . | |
| Sirvent A, Benistant C, Roche S,2008. Cytoplasmic signalling by the c?Abl tyrosine kinase in normal and cancer cells[J].Biology of the Cell,100(11):617?631.DOI:10.1042/BC200 80020 . | |
| Sun H N, Ma D Y, Guo X Y, Hao Y Y, Jin M H, Han Y H, Jin X, Kwon T,2024. Peroxiredoxin I and II as novel therapeutic molecular targets in cervical cancer treatment through regulation of endoplasmic reticulum stress induced by bleomycin[J]. Cell Death Discovery,10(1):267. DOI:10.1038/S4142 0-024-02039-7 . | |
| Tien N S, Sabelis M W, Egas M,2015. Inbreeding depression and purging in a haplodiploid:gender?related effects[J].Heredity(Edinb),114:327?332. DOI:10.1038/hdy.2014.106 . | |
| Wang P T, Liu W C, Han C, Wang S T, Bai M Y, Song C P,2024. Reactive oxygen species: Multidimensional regulators of plant adaptation to abiotic stress and development[J].Journal of Integrative Plant Biology,66(3):330?367. DOI:10.1111/jipb.13601 . | |
| Wu H G, Guang X M, Al?Fageeh M B, Cao J W, Pan S K, Zhou H M, Zhang L, Abutarboush M H, Xing Y P, Xie Z Y, Alshanqeeti A S, Zhang Y R, Yao Q L, Al?Shomrani B M, Zhang D, Li J, Manee M M, Yang Z L, Yang L F, Liu Y Y, Zhang J L, Altammami M A, Wang S Y, Yu L L, Zhang W B, Liu S Y, Ba L, Liu C X, Yang X K, Meng F H, Wang S W, Li L, Li E L, Li X Q, Wu K F, Zhang S, Wang J Y, Yin Y, Yang H M, Al?Swailem A M, Wang J,2014. Camelid genomes reveal evolution and adaptation to desert environments[J].Nature Communications,5:5188.DOI:10.1038/ncomms6188 . | |
| Xu W, Liu L, Mooslehner K, Emson P C,1997. Structural organization of the human vesicular monoamine transporter type?2 gene and promoter analysis using the jelly fish green fluorescent protein as a reporter[J]. Molecular Brain Research,45(1):41?49.DOI:10.1016/S0169-328X(96)00218-5 . | |
| Yang J, Li W R, Lv F H, He S G, Tian S L, Peng W F, Sun Y W, Zhao Y X, Tu X L, Zhang M, Xie X L, Wang Y T, Li J Q, Liu Y G, Shen Z Q, Wang F, Liu G J, Lu H F, Kantanen J H, Han J L, Li M H, Liu M J,2016. Whole?genome sequencing of native sheep provides insights into rapid adaptations to extreme environments[J].Molecular Biology and Evolution,33(10):2576?2592. DOI:10.1093/molbev/msw129 . | |
| Zhu L F, Deng C, Zhao X, Ding J J, Huang H S, Zhu S L, Wang Z W, Qin S S, Ding Y H, Lu G Q, Yang Z S,2018. Endangered Père David’s deer genome provides insights into population recovering[J].Evolutionary Applications,11(10):2040?2053. DOI:10.1111/eva.12705 . | |
| Zhu Ruocen, Jiang Weiwei, Tan Zhuliang, Yi Jine,2015. Progress of reactive oxygen species,oxidative stress,cell apoptosis and antioxidant in animals[J].Journal of Traditional Chinese Veterinary Medicine,34(3):21?25.DOI:10.13823/j.cnki.jtcvm.2015.03.005. (in Chinese with English abstract) | |
| Zhou M J, Guo J J, Li S X, Li A N, Fang Z Y, Zhao M, Zhang M H, Wang X T,2023. Effect of peroxiredoxin 1 on the regulation of trophoblast function by affecting autophagy and oxidative stress in preeclampsia[J].Journal of Assisted Reproduction and Genetics,40(7):1573?1587.DOI:10.1007/s10815- 023-02820-0 . | |
| 朱若岑,蒋维维,谭柱良,易金娥,2015. 动物体内活性氧、氧化应激与细胞凋亡以及抗氧化剂研究进展[J].中兽医医药杂志,34(3):21?25.DOI:10.13823/j.cnki.jtcvm.2015.03.005 . | |
| 柏新富,朱建军,王仲礼,谭永芹,刘林德,2012. 干旱区木本植物盐分积累与其耐旱性的关系[J].林业科学,48(7):45?49. | |
| 钱文熙,敖维平,玉苏普·阿布来提,2014. 塔里木马鹿采食量与消化率研究[J].中国草食动物科学,34(2):31?32,38.DOI:10.3969/j.issn.2095-3887.2014.02.010 . |
/
| 〈 |
|
〉 |