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中华白海豚3 个MHC 基因座位遗传变异的初步分析

徐士霞,张盼,李树珍,周开亚,魏辅文,杨光   

  1. 南京师范大学生命科学学院,江苏省生物多样性与生物技术重点实验室,南京210046
  • 出版日期:2009-12-02 发布日期:2009-03-08

A preliminary analysis of genetic variation at three MHC loci of the Indo-Pacific humpback dolphin (Sousa chinensis)

XU Shixia,ZHANG Pan,LI Shuzhen,ZHOU Kaiya,WEI Fuwen,YANG Guang   

  1. Jiangsu Key Laboratory for Biodiversity and Biotechnology,College of Life Sciences,Nanjing Normal University,Nanjing 210046,China
  • Online:2009-12-02 Published:2009-03-08

摘要: 主要组织相容性复合体(Major histocompatibility complex,MHC) 基因是由一组紧密连锁的基因组成,是哺乳动物免疫系统中最重要的组成部分。本文选择3 个MHC 基因座位的第二外元,即:MHC-I 类基因和II 类基因的DRA 和DQB 座位,初步调查濒危物种中华白海豚的遗传变异。共鉴定了2 个DRA、2 个DQB 和7 MHC-I等位基因。DRA 座位遗传变异非常低,而DQB 和MHC-I 座位具有相对较高水平的遗传变异。并且,在DQB 和MHC-I 基因座位的假定的抗原结合位点(Antigen binding sites,ABS),非同义替代明显大于同义替代,提示平衡选择(Balancing selection)维持这两个座位的多态性,而在DRA 座位上,并没有检测到平衡选择。系统发生分析表明中华白海豚的MHC 等位基因没有聚在一起,而是和其他的物种聚在一起,符合MHC 跨种进化(Transspecies evolution)的模式。

关键词: 平衡选择, 遗传变异, 中华白海豚, 跨种进化

Abstract: The major histocompatibility complex (MHC)consists of a group of closely linked genes that constitute the most important genetic component of the mammalian immune system. Exon 2 of three MHC loci,i. e. DQB and DRA of MHC class II,and class I,were chosen to preliminarily characterize the genetic variability of the Indo-Pacific humpback dolphin (Sousa chinensis),an endangered species found in coastal China. The DRA,DQB and MHC-I loci each contained two, two,and seven alleles,respectively. Little sequence variation was detected at the DRA locus,relatively higher at the DQB, but considerable sequence variation at the MHC-I. Relatively high rates of non-synonymous (dN )vs. synonymous (dS ) substitution in the antigen binding sites (ABS)suggested balancing selection for maintaining polymorphisms at the MHC-I and DQB loci,although this result was not supported by data from the DRA locus. Phylogenetic reconstruction suggested that three MHC loci exon 2 sequences are not separated according to species,but are intermixed with other species,which was consistent with the trans-species evolution model of the MHC.

Key words: Balancing selection, Genetic variation, Indo-Pacific humpback dolphin (Sousa chinensis), Trans-species evolution