ACTA THERIOLOGICA SINICA ›› 2025, Vol. 45 ›› Issue (3): 283-294.DOI: 10.16829/j.slxb.150940
• ORIGINAL PAPERS • Previous Articles Next Articles
Xiaoyan PU1(), Chongyang DAI1, Yaxuan WANG1, Dengbang WEI2(
)
Received:
2024-04-17
Accepted:
2024-08-14
Online:
2025-05-31
Published:
2025-06-03
Contact:
Dengbang WEI
通讯作者:
魏登邦
作者简介:
蒲小燕 (1975- ),女,博士研究生,主要从事低氧适应及损伤相关机制研究. E-mail: puxiaoyan1975@163.com
基金资助:
CLC Number:
Xiaoyan PU, Chongyang DAI, Yaxuan WANG, Dengbang WEI. The expression patterns of surfactant protein A (SP‐A) in lung and skeletal muscle in SD rat and plateau zokor (Eospalax baileyi) under the hypoxia environments[J]. ACTA THERIOLOGICA SINICA, 2025, 45(3): 283-294.
蒲小燕, 戴重阳, 王雅轩, 魏登邦. 低氧环境下高原鼢鼠及SD大鼠肺和骨骼肌中SP‑A的表达模式[J]. 兽类学报, 2025, 45(3): 283-294.
样本 Sample | 原始读数 Raw reads | 清洁读数 Clean reads | 错误率 Error rate/% | 碱基质量值 Q20/% | 碱基质量值 Q30/% |
---|---|---|---|---|---|
RL_JR_1 | 60792716 | 60326478 | 0.025 1 | 98.10 | 94.15 |
RL_JR_2 | 58037480 | 56085200 | 0.025 3 | 97.96 | 93.89 |
RL_JR_3 | 63848522 | 61660090 | 0.025 9 | 97.75 | 93.39 |
RH_JR_1 | 50958280 | 49219200 | 0.025 8 | 97.80 | 93.45 |
RH_JR_2 | 55253402 | 52263220 | 0.026 2 | 97.61 | 93.06 |
RH_JR_3 | 47158104 | 44837466 | 0.026 1 | 97.65 | 93.10 |
ZL_JR_1 | 44498698 | 43993632 | 0.026 1 | 97.49 | 93.17 |
ZLJ_JR_2 | 46066694 | 45538394 | 0.023 3 | 97.59 | 93.36 |
ZLJ_JR_3 | 48235896 | 47710310 | 0.026 5 | 97.33 | 92.79 |
ZHJ_JR_1 | 41859668 | 41039026 | 0.027 0 | 97.13 | 92.43 |
ZHJ_JR_2 | 45660114 | 45068504 | 0.026 6 | 97.29 | 92.74 |
ZHJ_JR_3 | 45736038 | 45095202 | 0.026 4 | 97.39 | 92.95 |
Table 1 Sequencing data statistics and sequence alignment analysis of muscle tissues transcripts from SD rat and plateau zokor
样本 Sample | 原始读数 Raw reads | 清洁读数 Clean reads | 错误率 Error rate/% | 碱基质量值 Q20/% | 碱基质量值 Q30/% |
---|---|---|---|---|---|
RL_JR_1 | 60792716 | 60326478 | 0.025 1 | 98.10 | 94.15 |
RL_JR_2 | 58037480 | 56085200 | 0.025 3 | 97.96 | 93.89 |
RL_JR_3 | 63848522 | 61660090 | 0.025 9 | 97.75 | 93.39 |
RH_JR_1 | 50958280 | 49219200 | 0.025 8 | 97.80 | 93.45 |
RH_JR_2 | 55253402 | 52263220 | 0.026 2 | 97.61 | 93.06 |
RH_JR_3 | 47158104 | 44837466 | 0.026 1 | 97.65 | 93.10 |
ZL_JR_1 | 44498698 | 43993632 | 0.026 1 | 97.49 | 93.17 |
ZLJ_JR_2 | 46066694 | 45538394 | 0.023 3 | 97.59 | 93.36 |
ZLJ_JR_3 | 48235896 | 47710310 | 0.026 5 | 97.33 | 92.79 |
ZHJ_JR_1 | 41859668 | 41039026 | 0.027 0 | 97.13 | 92.43 |
ZHJ_JR_2 | 45660114 | 45068504 | 0.026 6 | 97.29 | 92.74 |
ZHJ_JR_3 | 45736038 | 45095202 | 0.026 4 | 97.39 | 92.95 |
Fig. 1 Transcriptome analysis of skeletal muscle in SD rat at different altitudes. A: PCA analysis of transcripts; B: Differential gene volcano map; C: GO enrichment analysis; D: KEGG pathway enrichment analysis of up-regulated differential genes; E: KEGG pathway enrichment analysis of down-regulated differential genes; F: TPM values of SFTPA gene in each sample; G: SFTPA gene expression differences between the two groups. RL and RH refers to SD rats in the low-altitude group and SD rats in the high-altitude group (n = 3)
基因名称 Gene name | 表达差异倍数 Log2FC | P 值 P value | 显著性 Significant | 趋势 Regulate |
---|---|---|---|---|
Sftpc | 7.375 081 543 | 0.015 5 | Yes | 上调Up |
Rab1b | 7.138 197 744 | 0.021 2 | Yes | 上调Up |
SFTPA | 6.863 194 973 | 0.008 0 | Yes | 上调Up |
Pitx1 | 6.419 578 930 | < 0.001 | Yes | 上调Up |
Nectin4 | 6.174 529 850 | 0.024 7 | Yes | 上调Up |
Pnma1 | -6.151 937 528 | 0.016 0 | Yes | 下调Down |
Taf13 | 6.036 091 339 | 0.022 6 | Yes | 上调Up |
Chia | 6.025 407 012 | 0.042 7 | Yes | 上调Up |
Fetub | 5.789 343 533 | 0.044 0 | Yes | 上调Up |
Ttr | 5.716 509 656 | 0.041 8 | Yes | 上调Up |
Table 2 Differential expression of genes in skeletal muscle tissue of SD rats at different altitudes
基因名称 Gene name | 表达差异倍数 Log2FC | P 值 P value | 显著性 Significant | 趋势 Regulate |
---|---|---|---|---|
Sftpc | 7.375 081 543 | 0.015 5 | Yes | 上调Up |
Rab1b | 7.138 197 744 | 0.021 2 | Yes | 上调Up |
SFTPA | 6.863 194 973 | 0.008 0 | Yes | 上调Up |
Pitx1 | 6.419 578 930 | < 0.001 | Yes | 上调Up |
Nectin4 | 6.174 529 850 | 0.024 7 | Yes | 上调Up |
Pnma1 | -6.151 937 528 | 0.016 0 | Yes | 下调Down |
Taf13 | 6.036 091 339 | 0.022 6 | Yes | 上调Up |
Chia | 6.025 407 012 | 0.042 7 | Yes | 上调Up |
Fetub | 5.789 343 533 | 0.044 0 | Yes | 上调Up |
Ttr | 5.716 509 656 | 0.041 8 | Yes | 上调Up |
Fig. 2 Transcriptome analysis of skeletal muscle in plateau zokor at different altitudes. A: PCA analysis of transcripts; B: Differential gene volcano map; C: GO enrichment analysis; D: KEGG pathway enrichment analysis of up-regulated differential genes; E: KEGG pathway enrichment analysis of down-regulated differential genes. ZL and ZH refers to plateau zokor in the low-altitude group and plateau zokor in the high-altitude group (n = 3)
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