Genetic characteristics of Neophocaena sunameri in Liaoning coastal waters based on whole genome resequencing
GAO Xianggang, WANG Zhen, LU Zhichuang, DU Jing, XING Yankuo, HAN Jiabo, TIAN Jiashen
2026, 46(4):
575-585.
DOI: 10.16829/j.slxb.151080
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In order to better understand the population structure and genetic differences of the East Asian finless porpoise (Neophocaena sunameri) distributed in Liaoning coastal waters, and to provide scientific basis for species conservation, this study collected muscle tissues from 47 individuals of the northern population of N. sunameri (NSN) from Liaoning coastal waters for whole genome resequencing, with a sequencing depth of 10×. Subsequently, the sequence data of finless porpoises from the southern population of N. sunameri (NSS) from the Yangtze River estuary, the population of N. asiaeorientalis (NA) from the Yangtze River basin, and the population of N. phocaenoides (NP) from the Fujian sea area were downloaded from the NCBI database. Genetic diversity analysis, genetic structure analysis, principal component analysis, phylogenetic tree construction, genetic differentiation index, gene flow, and genetic distance analysis were conducted using sequencing data from the four populations. The observed heterozygosity (Ho) and expected heterozygosity (He) of the population in Liaoning coastal waters were 0. 312 3 and 0. 321 0, respectively, indicating that the genetic diversity of the finless porpoise distributed in the Liaoning oastal waters is not low and represents a large and stable population. The results of phylogenetic tree analysis, principal component analysis, and genetic structure analysis were consistent, all of which can distinguish different populations. Overall, the four populations can be divided into three groups. Group I includes NP population, Group II represents NA population and Group III represents the East Asian finless porpoise population, including the MSN and NSS populations. The genetic differentiation index between NSN and NP was 0. 178 0, the genetic differentiation index between NSN and NA was 0. 047 8, the genetic differentiation index between NSN and NSS was 0. 023 1, the genetic distance was 0. 031 9, and the gene flow was 10. 554 5. In summary, East Asian finless porpoises distributed in the Liaoning coastal waters exhibit relatively high genetic diversity. They belong to the same species as NSS, with sufficient gene exchange and low genetic differentiation, and can be protected as a management unit.