Ballari S A,Cuevas M F,Ojeda R A,Navarro J L.2015.Diet of wild boar(Sus scrofa) in a protected area of Argentina:the importance of baiting.Mammal Research,60(1):81-87. Ballari S A,García M N.2014.A review of wild boar Sus scrofa diet and factors affecting food selection in native and introduced ranges.Mammal Review,44(2):124-134. Becker A A,Hesta M,Hpllants J,Janssens G P,Huys G.2014.Phylogenetic analysis of faecal microbiota from captive cheetahs reveals underrepresentation of Bacteroidetes and Bifidobacteriaceae.BMC Microbiology,14(1):43. Brestoff J R,Artis D.2013.Commensal bacteria at the interface of host metabolism and the immune system.Nature Immunology,14(7):676-684. Chen S F,Zhou Y Q,Chen Y R,Gu J.2018.Fastp:an ultra-fast all-in-one FASTQ preprocessor.Bioinformatics,34(17):i884-i890. Crespo-Piazuelo D,Estellé J,Revilla M,Criado-Mesas L,Ramayo-Caldas Y,Óvilo C,Fernández A I,Ballester M,Folch J M.2018.Characterization of bacterial microbiota compositions along the intestinal tract in pigs and their interactions and functions.Scientific Reports,8(1):12727. Di G D,Aloisio I,Mazzola G,Biavati B.2014.Bifidobacteria:their impact on gut microbiota composition and their applications as probiotics in infants.Applied Microbiology and Biotechnology,98(2):563-577. Edgar R C.2013.UPARSE:highly accurate OTU sequences from microbial amplicon reads.Nature Methods,10(10):996-998. Edwards J E,Huws S A,Kim E J,Kingston-Smith A H.2007.Characterization of the dynamics of initial bacterial colonization of nonconserved forage in the bovine rumen.FEMS Microbiology Ecology,62(3):323-335. Ezenwa V O,Gerardo N M,Inouye D W,Medina M,Xavier J B.2012.Animal behavior and the microbiome.Science,338(6104):198-199. Fang W,Fang Z M,Zhou P,Chang F,Xiao Y Z.2013.Evidence for Lignin Oxidation by the giant panda fecal microbiome.PLoS ONE,7(11):e50312. Fernando S C,Purvis H T,Najar F Z,Sukharnikov L O,Krehbiel C R,Nagaraja T G,Roe B A,DeSilva U.2010.Rumen microbial population dynamics during adaptation to a high-grain diet.Applied and Environmental Microbiology,76(22):7482-7490. Garza S J,Tabak M A,Miller R S,Farnsworth M L,Burdet C L.2017.Abiotic and biotic influences on home-range size of wild pigs(Sus scrofa).Journal of Mammalogy,99(1):97-107. Gong J,Yang C B.2012.Advances in the methods for studying gut microbiota and their relevance to the research of dietary fiber functions.Food Research International,48(2):916-929. Guan Y,Yang H T,Han S Y,Feng L M,Wang T M,Ge J P.2017.Comparison of the gut microbiota composition between wild and captive sika deer(Cervus nippon hortulorum) from feces by high-throughput sequencing.AMB Express,7(1):212. Guan Y,Zhang H H,Gao X D,Shang S,Wu X Y,Chen J,Zhang W,Zhang W H,Jiang M S,Zhang B H,Chen P.2016.Comparison of the bacterial communities in feces from wild versus housed sables(Martes zibellina) by high-throughput sequence analysis of the bacterial 16S RNA gene.AMB Express,6(1):98. Hafeez S,Abbas M,Khan Z H,Rehman E.2011.Preliminary analy-sis of the diet of wild boar(Sus scrofa L.,1758) in Islamabad,Pakistan.Turkish Journal of Zoology,35(1):115-118. Hu X L,Liu G,Shafer A B A,Wei Y T,Zhou J T,Lin S B,Wu H B,Zhou M,Hu D F,Liu S Q.2017.Comparative analysis of the gut microbial communities in forest and alpine musk deer using high-throughput sequencing.Frontiers in Microbiology,8(e2836):572. Huang J,Zhang W,Fan R,Liu Z G,Huang T,Li J Y,Du T H,Xiong T.2020.Composition and functional diversity of fecal bacterial community of wild boar,commercial pig and domestic native pig as revealed by 16S rRNA gene sequencing.Archives of Microbiology,202(2020):843-857. Ishaq S L,Wright A D.2014.High-throughput DNA sequencing of the ruminal bacteria from moose(Alces alces) in Vermont,Alaska,and Norway.Microbial Ecology,68(2):185-195. Jin L,Wang L Z,Wang Z S,Xue B,Peng Q H.2019.Analysis of cecum bacterial diversity of goat based on Illumina Mi Seq sequencing.Microbiology China,46(6):1423-1433.(in Chinese) Langille M G,Zaneveld J,Caporaso J G,McDonald D,Knights D,Reyes J A,Clemente J C,Burkepile D E,Thurber R L V,Knight R,Beiko R G,Huttenhower C.2013.Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.Nature Biotechnology,31(9):814-821. Lau S K P,Teng J L L,Chiu T H,Chan E,Tsang A K L,Panagiotou G,Zhai S L,Woo P C Y.2018.Differential microbial communities of omnivorous and herbivorous cattle in southern China.Computational and Structural Biotechnology Journal,16(2018):54-60. Li X Q,Zhu Y H,Zhang H F,Yue Y,Cai Z X,Lu Q P,Zhang L,Weng X G,Zhang F J,Zhou D,Yang J C,Wang J F.2012.Risks associated with high-dose Lactobacillus rhamnosus in an Escherichia coli model of piglet diarrhoea:intestinal microbiota and immune imbalances.PLoS ONE,7(7):e40666. Liu H,Li L,Ma Q,Wan D M,Zhang S Q,Zhu Y P.2011.Review on wild boar research.Sichuan Journal of Zoology,30(2):310-314.(in Chinese) Lozupone C,Lladser M E,Knights D,Stombaugh J,Knight R.2011.UniFrac:an effective distance metric for microbial community comparison.The ISME Journal,5(2):169-172. Luo R.1993.The Mammalian Fauna of Guizhou.Guiyang:Guizhou Science and Technology Publishing House,377-378.(in Chinese) Ma C,Zhang H P,Liu C H,Zhao J.2014.Research advance in ruminal and intestinal microbes diversity in cattle.Chinese Journal of Animal Nutrition,26(4):852-862.(in Chinese) Magoč T,Salzberg S L.2011.FLASH:fast length adjustment of short reads to improve genome assemblies.Bioinformatics,27(21):2957-2963. McCoy A N,Araújo-Pérez F,Azcárate-Peril A,Yeh J J,Sandler R S,Keku T O.2013. Fusobacterium is associated with colorectal adenomas.PLoS ONE,8(1):e53653. Meng G T,Zhang M H,Zhou S C.2013.Winter carrying capacity and the optimum population density of wild boar in Fenghuang Mountains National Nature Reserve of Heilongjiang Province.Acta Ecologica Sinica,33(3):957-963.(in Chinese) Nelson T M,Rogers T L,Carlini A R,Brown M V.2012.Diet and phylogeny shape the gut microbiota of Antartic seals:a comparison of wild and captive animals.Environmental Microbiology,15(4):1132-1145. Niu Q,Li P H,Hao S S,Zhang Y Q,Kim S W,Li H Z,Ma X,Gao S,He L C,Wu W J,Huang X G,Hua J D,Zhou B,Huang R H.2015.Dynamic distribution of the gut microbiota and the relationship with apparent crude fiber digestibility and growth stages in pigs.Scientific Reports,5(1):9938. Petrova M I,Lievens E,Malik S,Imholz N,Lebeer S.2015.Lactobacillus species as biomarkers and agents that can promote various aspects of vaginal health.Frontiers Physiology,6:81. Quast C,Pruesse E,Yilmaz P,Gerken J,Schweer T,Yarza P,Peplies J,Gl ckner F O.2013.The SILVA ribosomal RNA gene database project:improved data processing and web-based tools.Nucleic Acids Research,41(D1):D590-D596. R Core Team.2017.R:A language and environment for statistical computing.R Foundation for Statistical Computing,Vienna,Austria.URL https://www.R-project.org/. Ren S E,Nan X N,Xu M,Zou Y,Liang N N,Shi J N,Han C X.2020.Comparison of intestinal bacterial diversity of Gansu zokor under wild and artificial feeding conditions.Acta Microbiologica Sinica,60(4):826-838.(in Chinese) Ruggiero P.2014.Use of probiotics in the fight against Helicobacter pylori.World Journal of Gastrointestinal Pathophysiology,5(4):384-391. Schloss P D,Westcott S L,Ryabin T,Hall J R,Hartmann M,Hollister E B,Lesniewski R A,Oakley B B,Parks D H,Robinson C J,Sahl J W,Stres B,Thallinger G G,Horn D J V,Weber C F.2009.Introducing mothur:Open-Source,Platform-Independent,Community-Supported software for describing and comparing microbial communities.Applied and Environmental Microbiology,75(23):7537-7541. Segata N,Izard J,Waldron L,Gevers D,Miropolsky L,Garrett W S,Huttenhower C.2011.Metagenomic biomarker discovery and explanation.Genome Biology,12(6):R60. Shin H M,Kim J,Jin S D,Won H Y,Park S.2020.Diet composition of the Korean wild boar Sus scrofa coreanus(Suidae) at Mt.Jeombongsan,Korea.Journal of Ecology and Environment,44(1):1-12. Shin N R,Whon T W,Bae J W.2015.Proteobacteria:microbial signature of dysbiosis in gut microbiota.Trends in Biotechnology,33(9):496-503. Su H J,Hu C S,Zhang M M,Liang S.2018.A study on the characteristics of crop damage caused by wild boar(Sus scrofa) and the attitudes of local residents in Chishui Alsophila National Nature Reserve,Guizhou Province,China.Acta Theriologica Sinica,38(4):359-368.(in Chinese) Suen G,Stevenson D M,Bruce D C,Chertkov O,Copeland A,Cheng J F,Detter C,Detter J C,Goodwin L A,Han C S,Hauser L J,Ivanova N N,Kyrpides N C,Land M L,Lapidus A,Lucas S,Ovchinnikova G,Pitluck S,Tapia R,Woyke T,Boyum J,Mead D,Weimer P J.2011.Complete genome of the cellulolytic ruminal Bacterium Ruminococcus albus 7.Journal of Bacteriology,193(19):5574-5575. Suzuki T A,Nachman M W.2016.Spatial heterogeneity of gut microbial composition along the Gastrointestinal tract in natural populations of house mice.PLoS ONE,11(9):e0163720. Wang B,Deng B,Yong F,Zhou H X,Qu C P,Zhou Z Y.2020.Comparison of the fecal microbiomes of healthy and diarrheic captive wild boar.Microbial Pathogenesis,147(2020):104377a. Wang J,Wang Q,Zeng D,Niu L L,Jian P,Zhang Y,Ni X Q.2015.Comparison of fecal microbiota from healthy and diarrhea Rhinopithecus roxellana.Chinese Journal of Veterinary Science,35(8):1232-1238.(in Chinese) Wang X Z,Zhang Y,Wen Q,Wang Y,Wang Z X,Tan Z,Wu K B.2020.Sex differences in intestinal microbial composition and function of Hainan special wild boar.Animals,10(9):1553b. Weldon L,Abolins S,Lenzi L,Bourne C,Riley E M,Viney M.2015.The gut microbiota of wild mice.PLoS ONE,10(8):e0134643. Wu C F,Yang F,Gao R,Huang Z X,Xu B,Dong Y Y,Hong T,Tang X H.2010.Study of fecal bacterial diversity in Yunnan snub-nosed monkey(Rhinopithecus bieti) using phylogenetic analysis of cloned 16S rRNA gene sequences.African Journal of Biotechnology,9(38):6278-6289. Wu Q,Wang S Z,Zhang S,You H,Hu Z F,Niu H X.2020.Functional prediction of rumen microbial diversity and functions of angus cattle based on 16S rRNA high-throughput sequencing.Journal of Microbiology,40(2):49-56.(in Chinese) Yang G L,Shi C X,Zhang S H,Liu Y,Li Z Q,Gao F Y,Cui Y Y,Yan Y F,Li M.2020.Characterization of the bacterial microbiota composition and evolution at different intestinal tract in wild pigs(Sus scrofa ussuricus).Peerj,8(18):e9124. Yang H,Huang X C,Fang S M,Xin W S,Huang L S,Chen C Y.2016.Uncovering the composition of microbial community structure and metagenomics among three gut locations in pigs with distinct fatness.Scientific Reports,6(1):27427. Zhao G J,Feng X L,Zhu J B,Zheng C L,Jie H,Zeng D J,Zhang C L,Qi W H.2019.Comparative analysis of fecal microbiota of captive musk deer in juvenile and adult.Acta Theriologica Sinica,39(3):266-275.(in Chinese) Zhao G J,Gong Y N,Yang H T,Xie B,Wang T M,Ge J P,Feng L M.2019.Study on habitat use and activity rhythms of wild boar in eastern region of Northeast Tiger and Leopard National Park.Acta Theriologica Sinica,39(4):431-441.(in Chinese) Zhu L F,Wu Q,Dai J Y,Zhang S N,Wei F W.2011.Evidence of cellulose metabolism by the giant panda gut microbiome.Proceedings of the National Academy of Science,108(43):17714-17719. 马晨,张和平,刘彩虹,赵洁.2014.牛瘤胃与肠道微生物多样性的研究进展.动物营养学报,26(4):852-862. 王剑,王强,曾东,牛李丽,简平,张艳,倪学勤.2015.健康和腹泻川金丝猴粪便菌群比较分析.中国兽医学报,35(8):1232-1238. 任世恩,南小宁,许淼,邹垚,梁南楠,石建宁,韩崇选.2020.野生和人工饲喂条件下甘肃鼢鼠肠道细菌多样性比较.微生物学报,60(4):826-838. 刘鹤,李乐,马强,万冬梅,张树清,祝业平.2011.野猪研究进展.四川动物,30(2):310-314. 吴琼,王思珍,张适,尤欢,胡宗福,牛化欣.2020.基于16S rRNA高通量测序技术分析安格斯牛瘤胃微生物多样性和功能预测的研究.微生物学杂志,40(2):49-56. 罗蓉.1993.贵州兽类志.贵阳:贵州科技出版社. 金磊,王立志,王之盛,薛白,彭全辉.2019.基于高通量测序技术对山羊盲肠细菌多样性的分析.微生物学通报,46(6):1423-1433. 孟根同,张明海,周绍春.2013.黑龙江凤凰山国家级自然保护区野猪冬季容纳量及最适种群密度.生态学报,33(3):957-963. 赵国静,宫一男,杨海涛,谢冰,王天明,葛剑平,冯利民.2019.东北虎豹国家公园东部的野猪生境利用和活动节律初步研究.兽类学报,39(4):431-441. 赵贵军,封孝兰,朱吉彬,郑程莉,竭航,曾德军,张承露,戚文华.2019.成年与未成年圈养林麝粪便菌群多样性的比较.兽类学报,39(3):266-275. 粟海军,胡灿实,张明明,梁盛.2018.贵州赤水桫椤国家级自然保护区野猪危害特征与居民态度分析.兽类学报,38(4):359-368. |