Transcriptomatic determination of convergent evolution between plateau zokors (Eospalax baileyi) and naked mole rats (Heterocephalus glaber)
DENG Xiaogong, WANG Kun, ZHANG Shoudong, SU Jianping, ZHANG Tongzuo, LIN Gonghua
2014, 34(2):
129-137.
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Subterranean rodents have evolved convergent traits in many of their biological characteristics that allow them to adapt to a similar underground burrowing life style. However,no study has yet been published about this convergent evolution at the molecular level. Here,we use high-throughput next-generation sequencing data (transcriptomes)to identify both amino acid (AA)variations and gene expression levels in order to analyze the convergent evolution of two typical subterranean rodents,the plateau zokor (Eospalax baileyi)and the naked mole rat (Heterocephalus glaber). AA variation analysis detected 54 genes of which each had at least one convergent adaptation site;of these genes 13 were successfully annotated by their relatively obvious phenotypical functions. Within the 13 genes,four (Ptpn6,Sco1,Dhcr 24,and Add2) were related with hypoxia tolerance or adaptation to oxidative stress,four (Mbtps1,Atp1a1,Acsl3,and Ncoa2)were involved in nutrient transport or energy metabolism,fou(Smoc1,Kif1b, Tcap,and Cryab)were involved in limb development or muscle health,and the remaining gene (Myo6)was involved in auditory function. Gene expression level analyses of the two subterranean rodents detected 103 genes that were significantly upregulated (> 3 fold)as compared to mouse (Mus musculus)and guinea pig (Cavia porcellus);20 of these genes could be successfully annotated by their phenotypical functions. Within these 20 genes,12 were related with hypoxia tolerance functions,such as oxygen transport(Dsg2, Tab2, Hp,Rock1,and F5),oxygen metabolism (Tfb1m and Mrpl1),and DNA repair (Tdp2,Rad50,Alkbh2,Hltf, and Plk1),3 were related with the functional integrity of muscle (Sync and Taf3)and bone (Acp5),and the other 5 were involved in immune (Spon2 and Sh2d4a),biological rhythm (Clock),starvation tolerance (Pdk4 ),and reproduction (Clgn). Our results show that the hypoxia tolerance-related genes were the most important adaptation genes found in the two subterranean rodents,followed by the digging apparatus-related genes (especially the skeletal muscle)in addition to the genes important in energy metabolism and energy balance. This paper provides evidence for convergence of subterranean rodents at the molecular level.