兽类学报 ›› 2026, Vol. 46 ›› Issue (1): 1-19.DOI: 10.16829/j.slxb.151041
• 综述 • 下一篇
收稿日期:2024-12-16
接受日期:2025-04-21
出版日期:2026-01-30
发布日期:2026-02-03
通讯作者:
刘纯兵,于黎
作者简介:李燏湘(2000- ),女,硕士研究生,主要从事动物遗传学研究. E-mail: lixiang2@stu.ynu.edu.cn
基金资助:
Yuxiang LI(
), Xi TIAN, Chunbing LIU(
), Li YU(
)
Received:2024-12-16
Accepted:2025-04-21
Online:2026-01-30
Published:2026-02-03
Contact:
Chunbing LIU, Li YU
摘要:
人类活动和生态系统的破碎化导致生物多样性的加速退化和永久性下降。人工圈养繁殖被视为有效保护和扩大受威胁物种数量的重要方法,是拯救濒危动物的关键途径之一。但由于动物从野外到圈养环境,其食物和生存环境等多种因素均发生了较大的改变,从而引起哺乳动物胃肠道紊乱、感染和疾病等一系列问题。肠道微生物被广泛认为在维持机体健康方面具有非常重要的作用,其紊乱和生态失调会直接影响宿主的健康。圈养环境和野生环境之间存在大量不同的环境因素,本文阐述了野生哺乳动物在圈养环境下饮食改变、生境同质化、压力和抗生素4个方面对其肠道微生物的影响。不同食性哺乳动物的肠道微生物在面临圈养饮食简化时,多样性的变化并不一致,但在组成结构上都发生了改变;圈养状态下生境的高度同质化使得哺乳动物的肠道微生物表现出不同程度的人源化趋势;圈养环境中面临的各种压力会使哺乳动物肠道微生物失衡;圈养过程中直接或者间接使用抗生素会改变哺乳动物肠道微生物的组成结构,并增加肠道微生物抗生素抗性基因的种类和数目。这些因素的变化都引起了肠道微生物的改变,并对野生哺乳动物健康和野外放归工作等带来影响。本文还对未来研究方向进行了展望,以期为野生哺乳动物的保护提供参考和启发。
中图分类号:
李燏湘, 田西, 刘纯兵, 于黎. 圈养对野生哺乳动物肠道微生物的影响[J]. 兽类学报, 2026, 46(1): 1-19.
Yuxiang LI, Xi TIAN, Chunbing LIU, Li YU. The effects of captivity on gut microbiota of wild mammals[J]. ACTA THERIOLOGICA SINICA, 2026, 46(1): 1-19.
图 1 影响肠道微生物的4个圈养因素:饮食改变、生境同质化、压力和抗生素. 3个虚线框从外向内依次为:改进措施、肠道微生物的改变模式、圈养环境下相关因素的变化情况
Fig. 1 Four factors affecting gut microbiota in captive condition: dietary changes, habitat homogeneity, stress, and antibiotics. The three dotted boxes from the outside to the inside indicated improvement measures, change patterns of gut microbiota, and changes of related factors in captivity, respectively
| Adesokan H K, Akanbi I O, Akanbi I M, Obaweda R A,2015. Pattern of antimicrobial usage in livestock animals in south‑western Nigeria: The need for alternative plans[J]. Onderstepoort Journal of Veterinary Research,82(1):816. DOI:10.4102/ojvr.v82i1.816 . | |
| Agorastos A, Chrousos G P,2022. The neuroendocrinology of stress:the stress‑related continuum of chronic disease development[J]. Molecular Psychiatry,27:502‑513.DOI:10.1038/s41380-021-01224-9 . | |
| Aguilar‑Cucurachi M A, Dias P A, Rangel‑NegríN A, Chavira R, Boeck L, Canales‑Espinosa D,2010. Preliminary evidence of accumulation of stress during translocation in mantled howlers[J]. American Journal of Primatology,72(9):805‑810.DOI:10.1002/ajp.20841 . | |
| Agus A, Planchais J, Sokol H,2018. Gut microbiota regulation of Tryptophan metabolism in health and disease[J]. Cell Host Microbe,23(6):716‑724.DOI:10.1016/j.chom.2018.05.003 . | |
| Ahasan M S, Picard J, Elliott L, Kinobe R, Owens L, Ariel E,2017. Evidence of antibiotic resistance in Enterobacteriales isolated from green sea turtles,Chelonia mydas on the Great Barrier Reef[J]. Marine Pollution Bulletin,120(1‑2):18‑27. DOI:10.1016/j.marpolbul.2017.04.046 . | |
| Amato K R, Metcalf J L, Song S J, Hale V L, Clayton J, Ackermann G, Humphrey G, Niu K, Cui D, Zhao H,2016. Using the gut microbiota as a novel tool for examining colobine primate GI health[J]. Global Ecology and Conservation,7:225‑237.DOI:10.1016/j.gecco.2016.06.004 . | |
| Antwis R E, Edwards K L, Unwin B, Walker S L, Shultz S,2019. Rare gut microbiota associated with breeding success,hormone metabolites and ovarian cycle phase in the critically endangered eastern black rhino[J]. Microbiome,7(1):27. DOI:10.1186/s40168-019-0639-0 . | |
| Armstrong A R, WüNschmann A, Rigatti L H, Klein E C,2019. Clostridium difficile enterocolitis in a captive geoffroy’s spider monkey(Ateles geoffroyi) and common marmosets(Callithrix jacchus)[J]. Veterinary Pathology,56(6):959‑963.DOI:10.1177/0300985819864307 . | |
| Barraza‑Guerrero S I, Meza‑Herrera C A, GarcíA‑De La PeñA C, áVila‑RodríGuez V, Vaca‑Paniagua F, DíAz‑VeláSquez C E, Pacheco‑Torres I, Valdez‑Solana M A, Siller‑RodríGuez Q K, Valenzuela‑NúñEz L M, Herrera‑Salazar J C,2021. Unveiling the fecal microbiota in two captive mexican wolf(Canis lupus baileyi) populations receiving different type of diets[J]. Biology,10(7):637. DOI:10.3390/biology10070637 . | |
| Bauer S A, Pearl D L, Leslie K E, Fournier J, Turner P V,2012. Causes of obesity in captive cynomolgus macaques:influence of body condition,social and management factors on behaviour around feeding[J]. Laboratory Animals,46(3):193‑199. DOI:10.1258/la.2012.011120 . | |
| Bharwani A, Mian M F, Foster J A, Surette M G, Bienenstock J, Forsythe P,2016.Structural & functional consequences of chronic psychosocial stress on the microbiome & host[J]. Psychoneuroendocrinology,63:217‑227. DOI:10.1016/j.psyneuen. 2015.10.001 . | |
| Bo T, Liu H, Liu M, Liu Q, Li Q, Cong Y, Luo Y, Wang Y, Yu B, Pu T, Wang L, Wang Z, Wang D,2023. Mechanism of inulin in colic and gut microbiota of captive Asian elephant[J]. Microbiome,11(1):148. DOI:10.1186/s40168-023-01581-3 . | |
| BorbóN‑GarcíA A, Reyes A, Vives‑FlóRez M, Caballero S,2017. Captivity shapes the gut microbiota of Andean bears:insights into health surveillance[J]. Frontiers in Microbiology,8:1316. DOI:10.3389/fmicb.2017.01316 . | |
| Cabana F, Plowman A, Van Nguyen T, Chin S C, Wu S L, Lo H Y, Watabe H, Yamamoto F,2017. Feeding Asian pangolins:an assessment of current diets fed in institutions worldwide[J]. Zoo Biology,36(4):298‑305.DOI:10.1002/zoo.21375 . | |
| Cabana F, Tay C,2020. The addition of soil and chitin into Sunda pangolin(Manis javanica)diets affect digestibility,faecal scoring,mean retention time and body weight[J]. Zoo Biology,39(1):29‑36.DOI:10.1002/zoo.21517 . | |
| Castillo A K, Espinoza K, Chaves A F, Guibert F, Ruiz J, Pons M J,2022. Antibiotic susceptibility among non‑clinical Escherichia coli as a marker of antibiotic pressure in Peru(2009‑2019):one health approach[J]. Heliyon,8(9):e10573. DOI:10.1016/j.heliyon.2022.e10573 . | |
| Cathomas F, Lin H Y, Chan K L, Li L, Parise L F, Alvarez J, Durand‑De Cuttoli R, Aubry A V, Muhareb S, Desland F, Shimo Y, Ramakrishnan A, Estill M, Ferrer‑PéRez C, Parise E M, Wilk C M, Kaster M P, Wang J, Sowa A, Janssen W G, Costi S, Rahman A, Fernandez N, Campbell M, Swirski F K, Nestler E J, Shen L, Merad M, Murrough J W, Russo S J,2024. Circulating myeloid‑derived MMP8 in stress susceptibility and depression[J]. Nature,626(8001):1108‑1115.DOI:10.1038/s41586-023-07015-2 . | |
| Chen S T, Luo X, Hou R, Raubenheimer D, Ji W, Jin X, Jiang Z, Yu X, Wang J, Li M,2018. Nutrient balancing by captive golden snub‑nosed monkeys(Rhinopithecus roxellana)[J]. International Journal of Primatology,39:1124‑1138.DOI:10.1007/s10764-018-0070-6 . | |
| Cheng Y, Fox S, Pemberton D, Hogg C, Papenfuss A T, Belov K,2015. The Tasmanian devil microbiome‑implications for conservation and management[J]. Microbiome,3:76. DOI:10.1186/s40168-015-0143-0 . | |
| Chin S C, Lien C Y, Chan Y T, Chen C L, Yang Y C, Yeh L S,2012. Monitoring the gestation period of rescued Formosan pangolin(Manis pentadactyla pentadactyla) with progesterone radioimmunoassay[J]. Zoo Biology,31(4):479‑489.DOI:10.1002/zoo.20413 . | |
| Chong R, Grueber C E, Fox S, Wise P, Barrs V R, Hogg C J, Belov K,2019. Looking like the locals‑gut microbiome changes post‑release in an endangered species[J]. Animal Microbiome,1(1):8. DOI:10.1186/s42523-019-0012-4 . | |
| Clayton J B, Vangay P, Huang H, Ward T, Hillmann B M, Al‑Ghalith G A, Travis D A, Long H T, Tuan B V, Minh V V,2016. Captivity humanizes the primate microbiome[J]. Proceedings of the National Academy of Sciences of the United States of America,113(37):10376‑10381.DOI:10.1073/pnas.1521835113 . | |
| Comizzoli P, Power M L, Bornbusch S L, Muletz‑Wolz C R,2021. Interactions between reproductive biology and microbiomes in wild animal species[J]. Animal Microbiome,3(1):87. DOI:10.1186/s42523-021-00156-7 . | |
| Dahlhausen K E, Doroud L, Firl A J, Polkinghorne A, Eisen J A,2018. Characterization of shifts of koala(Phascolarctos cinereus)intestinal microbial communities associated with antibiotic treatment[J]. PeerJ,6:e4452. DOI:10.7717/peerj.4452 . | |
| Dallas J W, Warne R W,2023. Captivity and animal microbiomes:Potential roles of microbiota for influencing animal conservation[J]. Microbial Ecology,85(3):820‑838.DOI:10.1007/s00248- 022-01991-0 . | |
| Dantzer R,2017. Role of the kynurenine metabolism pathway in inflammation‑induced depression:preclinical approaches[J]. Current Topics in Behavioral Neuroscience,31:117‑138. DOI:10.1007/7854_2016_6 . | |
| David L A, Maurice C F, Carmody R N, Gootenberg D B, Button J E, Wolfe B E, Ling A V, Devlin A S, Varma Y, Fischbach M A, Biddinger S B, Dutton R J, Turnbaugh P J,2014. Diet rapidly and reproducibly alters the human gut microbiome[J]. Nature,505(7484):559‑563.DOI:10.1038/nature12820 . | |
| Davidson M, Rashidi N, Nurgali K, Apostolopoulos V,2022. The role of tryptophan metabolites in neuropsychiatric disorders[J]. International Journal of Molecular Sciences,23(17):9968. DOI:10.3390/ijms23179968 . | |
| De Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, Poullet J B, Massart S, Collini S, Pieraccini G, Lionetti P,2010. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa[J]. Proceedings of the National Academy of Sciences of the United States of America,107(33):14691‑14696.DOI:10.1073/pnas. 1005963107 . | |
| De Filippo C, Chioccioli S, Meriggi N, Troise A D, Vitali F, Mejia Monroy M, öZsezen S, Tortora K, Balvay A, Maudet C, Naud N, Fouché E, Buisson C, Dupuy J, BéZirard V, Chevolleau S, Tondereau V, Theodorou V, Maslo C, Aubry P, Etienne C, Giovannelli L, Longo V, Scaloni A, Cavalieri D, Bouwman J, Pierre F, GéRard P, GuéRaud F, Caderni G,2024. Gut microbiota drives colon cancer risk associated with diet:a comparative analysis of meat‑based and pesco‑vegetarian diets[J]. Microbiome,12(1):180. DOI:10.1186/s40168- 024-01900-2 . | |
| De Jonge N, Carlsen B, Christensen M H, Pertoldi C, Nielsen J L,2022. The gut microbiome of 54 mammalian species[J]. Frontiers in Microbiology,13:886252. DOI:10.3389/fmicb. 2022.886252 . | |
| Delport T C, Power M L, Harcourt R G, Webster K N, Tetu S G,2016. Colony location and captivity influence the gut microbial community composition of the Australian sea lion(Neophoca cinerea)[J]. Applied and Environmental Microbiology,82(12):3440‑3449. DOI:10.1128/AEM.00192-16 . | |
| Delsuc F, Metcalf J L, Wegener Parfrey L, Song S J, GonzáLez A, Knight R,2014. Convergence of gut microbiomes in myrmecophagous mammals[J]. Molecular Ecology,23(6):1301‑1317. DOI:10.1111/mec.12501 . | |
| Depauw S, Hesta M, Whitehouse‑Tedd K, Vanhaecke L, Verbrugghe A, Janssens G P,2013. Animal fibre:the forgotten nutrient in strict carnivores? First insights in the cheetah[J]. Journal of Animal Physiology and Animal Nutrition,97(1):146‑154. DOI:10.1111/j.1439-0396.2011.01252.x . | |
| DíAz S, Zafra‑Calvo N, Purvis A, et al.,2020. Set ambitious goals for biodiversity and sustainability[J]. Science,370(6515):411‑413.DOI:10.1126/science.abe1530 . | |
| Dillard B A, Chung A K, Gunderson A R, Campbell‑Staton S C, Moeller A H,2022. Humanization of wildlife gut microbiota in urban environments[J]. Elife,11:e76381. DOI:10.7554/eLife.76381 . | |
| Eisenhofer R, Helgen K M, Taggart D,2021. Signatures of landscape and captivity in the gut microbiota of southern hairy‑nosed wombats(Lasiorhinus latifrons)[J]. Anim Microbiome,3(1):4. DOI:10.1186/s42523-020-00068-y . | |
| Eskiocak S, Gozen A S, Taskiran A, Kilic A S, Eskiocak M, Gulen S,2006. Effect of psychological stress on the L‑arginine‑nitric oxide pathway and semen quality[J]. Brazilian Journal of Medical and Biological Research,39(5):581‑588.DOI:10.1590/S0100-879X2006000500003 . | |
| Faith J J, Ahern P P, Ridaura V K, Cheng J, Gordon J I,2014. Identifying gut microbe‑host phenotype relationships using combinatorial communities in gnotobiotic mice[J]. Science Translational Medicine,6(220):220‑211.DOI:10.1126/scitranslmed.3008051 . | |
| Fanson K V, Wielebnowski N C, Shenk T M, Lucas J R,2012. Comparative patterns of adrenal activity in captive and wild Canada lynx(Lynx canadensis)[J]. Journal of Comparative Physiology B‑biochemical Systemic and Environmental Physiology,182(1):157‑165. DOI:10.1007/s00360-011-0597-8 . | |
| Feuerbacher O, Bonar S A, Barrett P J,2017. Enhancing hatch rate and survival in laboratory‑reared hybrid devils hole pupfish through application of antibiotics to eggs and larvae[J]. North American Journal of Aquaculture,79(1):106‑114. DOI:10.1080/15222055.2016.1240123 . | |
| Figueroa J, Solà‑Oriol D, Manteca X, PéRez J F, Dwyer D M,2015. Anhedonia in pigs? Effects of social stress and restraint stress on sucrose preference[J]. Physiology & Behavior,151:509‑515. DOI:10.1016/j.physbeh.2015.08.027 . | |
| Fischer C P, Romero L M,2019. Chronic captivity stress in wild animals is highly species‑specific[J]. Conservation Physiology,7(1):coz093. DOI:10.1093/conphys/coz093 . | |
| Flint H J, Scott K P, Louis P, Duncan S H,2012. The role of the gut microbiota in nutrition and health[J]. Nature Reviews Gastroenterology & Hepatology,9(10):577‑589. DOI:10.1038/nrgastro.2012.156 . | |
| FlüGge G,1996. Alterations in the central nervous alpha 2‑adrenoceptor system under chronic psychosocial stress[J]. Neuroscience,75(1):187‑196.DOI:10.1016/0306-4522(96)00292-8 . | |
| Franceschini M D, Rubenstein D I, Low B, Romero L M,2010. Fecal glucocorticoid metabolite analysis as an indicator of stress during translocation and acclimation in an endangered large mammal,the Grevy’s zebra[J]. Animal Conservation,11(4):263‑269.DOI:10.1111/j.1469-1795.2008.00175.x . | |
| Frankel J S, Mallott E K, Hopper L M, Ross S R, Amato K R,2019. The effect of captivity on the primate gut microbiome varies with host dietary niche[J]. American Journal of Primatology,81(12):e23061. DOI:10.1002/ajp.23061 . | |
| Gales N, Cheal A,1992. Estimating diet composition of the Australian sea lion(Neophoa cinerea) from scat analysis:an unrliable technique[J]. Wildlife Research,19(4):447‑455. DOI:10.1071/wr9920447 . | |
| Gao H, Chi X, Qin W, Wang L, Song P, Cai Z, Zhang J, Zhang T,2019. Comparison of the gut microbiota composition between the wild and captive Tibetan wild ass(Equus kiang)[J]. Journal of Applied Microbiology,126(6):1869‑1878.DOI:10.1111/jam.14240 . | |
| Gibson K M, Nguyen B N, Neumann L M, Miller M, Buss P, Daniels S, Ahn M J, Crandall K A, Pukazhenthi B,2019. Gut microbiome differences between wild and captive black rhinoceros ‑ implications for rhino health[J]. Scientific Reports,9(1):7570. DOI:10.1038/s41598-019-43875-3 . | |
| Gogarten J F, RüHlemann M, Archie E, Tung J, Akoua‑Koffi C, Bang C, Deschner T, Muyembe‑Tamfun J J, Robbins M M, Schubert G, Surbeck M, Wittig R M, ZuberbüHler K, Baines J F, Franke A, Leendertz F H, Calvignac‑Spencer S,2021.Primate phageomes are structured by superhost phylogeny and environment[J]. Proceedings of the National Academy of Sciences of the United States of America,118(15):e2013535118.DOI:10.1073/pnas.2013535118 . | |
| Greco G, Madio A, Martella V, Campolo M, Corrente M, Buonavoglia D, Buonavoglia C,2005. Enterotoxemia associated with beta2 toxin‑producing Clostridium perfringens type A in two Asiatic black bears(Selenarctos thibetanus)[J]. Journal of Veterinary Diagnostic Investigation,17(2):186‑189. DOI:10.1177/104063870501700216 . | |
| Greene L K, Mckenney E A, O’Connell T M, Drea C M,2018. The critical role of dietary foliage in maintaining the gut microbiome and metabolome of folivorous sifakas[J]. Scientific Reports,8(1):14482. DOI:10.1038/s41598-018-32759-7 . | |
| Gu J, Yu L, Hua Y, Ning Y, Heng B, Qi J, Long Z, Yao M, Huang C, Li Z, Lang J, Jiang G, Ma J,2018. A comparison of food habits and prey preferences of Amur tiger(Panthera tigris altaica) at the southwest Primorskii Krai in Russia and Hunchun in China[J]. Integrative Zoology,13(5):595‑603. DOI:10.1111/1749-4877.12322 . | |
| Guo S T, Hou R, Garber P A, Raubenheimer D, Righini N, Ji W H, Jay O, He S J, Wu F, Li F F,2018. Nutrient‐specific compensation for seasonal cold stress in a free‐ranging temperate colobine monkey[J]. Functional Ecology,32(9):2170‑2180.DOI:10.1111/1365-2435.13134 . | |
| Guo W, Mishra S, Wang C, Zhang H, Li Y,2019. Comparative study of gut microbiota in wild and captive giant pandas(Ailuropoda melanoleuca)[J]. Genes,10(10):827. DOI:10.3390/genes10100827 . | |
| Hale V L, Tan C L, Niu K, Yang Y, Knight R, Zhang Q, Cui D, Amato K R,2018. Diet versus phylogeny:a comparison of gut microbiota in captive colobine monkey species[J]. Microbial Ecology,75(2):515‑527.DOI:10.1007/s00248-017-1070-3 . | |
| Hale V L, Tan C L, Niu K, Yang Y, Zhang Q, Knight R, Amato K R,2019. Gut microbiota in wild and captive Guizhou snub‐nosed monkeys,Rhinopithecus brelichi [J]. American Journal of Primatology,81(10‑11):e22989. DOI:10.1002/ajp.22989 . | |
| Harley D, Mawson P R, Olds L, Mcfadden M, Hogg C,2018. The contribution of captive breeding in zoos to the conservation of Australia’s threatened fauna[M]. Recovering Australian Threatened Species:A Book of Hope,281‑294.DOI:10.1071/978148630742532.281.32 . | |
| Harrison X A, Price S J, Hopkins K, Leung W T M, Sergeant C, Garner T W J,2019. Diversity‑stability dynamics of the amphibian skin microbiome and susceptibility to a lethal viral pathogen[J]. Frontiers in Microbiology,10:2883. DOI:10.3389/fmicb. 2019.02883 . | |
| He F, Zhai J, Zhang L, Liu D, Ma Y, Rong K, Xu Y, Ma J,2018. Variations in gut microbiota and fecal metabolic phenotype associated with fenbendazole and ivermectin tablets by 16S rRNA gene sequencing and LC/MS‑based metabolomics in Amur tiger[J]. Biochemical and Biophysical Research Communications,499(3):447‑453.DOI:10.1016/j.bbrc.2018. 03.158 . | |
| Heiman M L, Greenway F L,2016. A healthy gastrointestinal microbiome is dependent on dietary diversity[J]. Molecular Metabolism,5(5):317‑320.DOI:10.1016/j.molmet.2016.02.005 . | |
| Herholz C, Miserez R, Nicolet J, Frey J, Popoff M, Gibert M, Gerber H, Straub R,1999. Prevalence of beta2‑toxigenic Clostridium perfringens in horses with intestinal disorders[J]. Journal of Clinical Microbiology,37(2):358‑361.DOI:10.1128/JCM.37.2.358-361.1999 . | |
| Henry E G, Santini L, Butchart S H M, GonzáLez‑SuáRez M, Lucas P M, BeníTez‑LóPez A, Mancini G, Jung M, Cardoso P, Zizka A, Meyer C, AkçAkaya H R, Berryman A J, Cazalis V, Di Marco M,2024. Modelling the probability of meeting IUCN Red List criteria to support reassessments[J]. Global Change Biology,30(1):e17119. DOI:10.1111/gcb.17119 . | |
| Hickmott A J, Boose K J, Wakefield M L, Brand C M, Snodgrass J J, Ting N, White F J,2022. A comparison of faecal glucocorticoid metabolite concentration and gut microbiota diversity in bonobos(Pan paniscus)[J]. Microbiology(Reading),168(8):001226. DOI:10.1099/mic.0.001226 . | |
| Houtz J L, Sanders J G, Denice A, Moeller A H,2021. Predictable and host‑species specific humanization of the gut microbiota in captive primates[J]. Molecular Ecology,30(15):3677‑3687.DOI:10.1111/mec.15994 . | |
| Hua L, Gong S, Wang F, Li W, Ge Y, Li X, Hou F,2015. Captive breeding of pangolins:current status,problems and future prospects[J]. Zookeys,507:99‑114.DOI:10.3897/zookeys.507.6970 . | |
| Huang C, Feng S, Huo F, Liu H,2022. Effects of four antibiotics on the diversity of the intestinal microbiota[J]. Microbiology Spectrum,10(2):e0190421. DOI:10.1128/spectrum. 01904-21 . | |
| Huang G, Qi D, Yang Z, Hou R, Shi W, Zhao F, Li Z, Yan L, Wei F,2024. Gut microbiome as a key monitoring indicator for reintroductions of captive animals[J]. Conservation Biology,38(1):e14173. DOI:10.1111/cobi.14173 . | |
| Ishaq S L, Wright A D,2012. Insight into the bacterial gut microbiome of the North American moose(Alces alces)[J]. BMC Microbiology,12:212. DOI:10.1186/1471-2180-12-212 . | |
| Jaglin M, Rhimi M, Philippe C, Pons N, Bruneau A, Goustard B, Daugé V, Maguin E, Naudon L, Rabot S,2018. Indole,a Signaling molecule produced by the gut microbiota,negatively impacts emotional behaviors in rats[J]. Frontiers in Neuroscience,12:216. DOI:10.3389/fnins.2018.00216 . | |
| Jia T, Zhao S, Knott K, Li X, Liu Y, Li Y, Chen Y, Yang M, Lu Y, Wu J, Zhang C,2018. The gastrointestinal tract microbiota of northern white‑cheeked gibbons(Nomascus leucogenys)varies with age and captive condition[J]. Scientific Reports,8(1):3214. DOI:10.1038/s41598-018-21117-2 . | |
| Jiang F, Song P, Liu D, Zhang J, Qin W, Wang H, Liang C, Gao H, Zhang T,2023. Marked variations in gut microbial diversity,functions,and disease risk between wild and captive alpine musk deer[J]. Applied Microbiology and Biotechnology,107(17):5517‑5529.DOI:10.1007/s00253-023-12675-1 . | |
| Jiang G, Sun H, Lang J, Yang L, Li C, Lyet A, Long B, Miquelle D G, Zhang C, Aramilev S,2014. Effects of environmental and anthropogenic drivers on Amur tiger distribution in northeastern China[J]. Ecological Research,29:801‑813. DOI:10.1007/s11284-014-1160-3 . | |
| Jin C, Luo T, Zhu Z, Pan Z, Yang J, Wang W, Fu Z, Jin Y,2017. Imazalil exposure induces gut microbiota dysbiosis and hepatic metabolism disorder in zebrafish[J]. Comparative Biochemistry and Physiology. Toxicology & Pharmacology,202:85‑93.DOI:10.1016/j.cbpc.2017.08.007 . | |
| Kerry R G, Patra J K, Gouda S, Park Y, Shin H S, Das G,2018. Benefaction of probiotics for human health:a review[J]. Journal of Food and Drug Analysis,26(3):927‑939.DOI:10.1016/j.jfda.2018.01.002 | |
| Kennedy P J, Cryan J F, Dinan T G, Clarke G,2017. Kynurenine pathway metabolism and the microbiota‑gut‑brain axis[J]. Neuropharmacology,112(Pt B):399‑412. DOI:10.1016/j.neuropharm.2016.07.002 . | |
| keulartz j,2015. Captivity for conservation? Zoos at a crossroads[J]. Journal of Agricultural and Environmental Ethics,28:335‑351. DOI:10.1007/s10806-015-9537-z . | |
| Klich D, łOpucki R, GałąZka M, śCibior A, GołęBiowska D, BrzezińSka R, Kruszewski B, Kaleta T, Olech W,2021. Stress hormone level and the welfare of captive European bison(Bison bonasus):the effects of visitor pressure and the social structure of herds[J]. Acta Veterinaria Scandinavica,63(1):24. DOI:10.1186/s13028-021-00589-9 . | |
| Kohl K D, Skopec M M, Dearing M D,2014. Captivity results in disparate loss of gut microbial diversity in closely related hosts[J]. Conservation Physiology,2(1):cou009. DOI:10.1093/conphys/cou009 . | |
| Laborda P, Sanz‑GarcíA F, Ochoa‑SáNchez L E, Gil‑Gil T, Hernando‑Amado S, MartíNez J L,2022. Wildlife and antibiotic resistance[J]. Front Cell Infect Microbiol,12:873989. DOI:10.3389/fcimb.2022.873989 . | |
| Lambert K G, Nelson R J, Jovanovic T, Cerdá M,2015. Brains in the city:Neurobiological effects of urbanization[J]. Neuroscience & Biobehavioral Reviews,58:107‑122.DOI:10.1016/j.neubiorev.2015.04.007 . | |
| Le Chatelier E, Nielsen T, Qin J,et al.,2013. Richness of human gut microbiome correlates with metabolic markers[J]. Nature,500(7464):541‑546.DOI:10.1038/nature12506 . | |
| Li B, Yang Y, Ma L, Ju F, Guo F, Tiedje J M, Zhang T,2015. Metagenomic and network analysis reveal wide distribution and co‑occurrence of environmental antibiotic resistance genes[J]. The International Society for Microbial Ecology Journal,9(11):2490‑2502.DOI:10.1038/ismej.2015.59 . | |
| Li Y, Hu X, Yang S, Zhou J, Zhang T, Qi L, Sun X, Fan M, Xu S, Cha M, Zhang M, Lin S, Liu S, Hu D,2017. Comparative analysis of the gut microbiota composition between captive and wild forest musk deer[J]. Frontiers in Microbiology,8:1705. DOI:10.3389/fmicb.2017.01705 . | |
| Lim S K, Kim D, Moon D C, Cho Y, Rho M,2020. Antibiotic resistomes discovered in the gut microbiomes of Korean swine and cattle[J]. GigaScience,9(5):giaa043. DOI:10.1093/gigascience/giaa043 . | |
| Liu C, Hu J, Wu Y, Irwin D M, Chen W, Zhang Z, Yu L,2021. Comparative study of gut microbiota from captive and confiscated‑rescued wild pangolins[J]. Journal of Genetics And Genomics,48(9):825‑835. DOI:10.1016/j.jgg.2021. 07.009 . | |
| Louca S, Polz M F, Mazel F, Albright M B N, Huber J A, O'Connor M I, Ackermann M, Hahn A S, Srivastava D S, Crowe S A, Doebeli M, Parfrey L W,2018. Function and functional redundancy in microbial systems[J]. Nature Ecology & Evolution,2(6):936‑943.DOI:10.1038/s41559-018-0519-1 . | |
| Ma L, Li B, Jiang X T, Wang Y L, Xia Y, Li A D, Zhang T,2017. Catalogue of antibiotic resistome and host‑tracking in drinking water deciphered by a large scale survey[J]. Microbiome,5(1):154. DOI:10.1186/s40168-017-0369-0 . | |
| Mangiaterra S, Marker L, Cerquetella M, Galosi L, Marchegiani A, Gavazza A, Rossi G,2022. Chronic stress‑related gastroenteric pathology in cheetah:relation between intrinsic and extrinsic factors[J]. Biology(Basel),11(4):606. DOI:10.3390/biology11040606 . | |
| MartíNez‑Mota R, Kohl K D, Orr T J, Denise Dearing M,2020. Natural diets promote retention of the native gut microbiota in captive rodents[J]. The International Society for Microbial Ecology Journal,14(1):67‑78.DOI:10.1038/s41396-019-0497-6 . | |
| MCCORD A I, CHAPMAN C A, WENY G,et al.,2014. Fecal microbiomes of non‑human primates in Western Uganda reveal species‑specific communities largely resistant to habitat perturbation[J]. American Journal of Primatology,76(4):347‑354.DOI:10.1002/ajp.22238 . | |
| Mcfall‑Ngai M, Hadfield M G, Bosch T C,et al.,2013. Animals in a bacterial world,a new imperative for the life sciences[J]. Proceedings of the National Academy of Sciences of the United States of America,110(9):3229‑3236.DOI:10.1073/pnas.1218525110 . | |
| Mcintosh R R, Page B, Goldsworthy S D,2006. Dietary analysis of regurgitates and stomach samples from free‑living Australian sea lions[J]. Wildlife Research,33(8):661‑669. DOI:10.1071/WR06025 . | |
| Mckenney E A, O’Connell T M, Rodrigo A, Yoder A D,2018. Feeding strategy shapes gut metagenomic enrichment and functional specialization in captive lemurs[J]. Gut Microbes,9(3):202‑217. DOI:10.1080/19490976.2017.1408762 . | |
| Mckenzie V J, Song S J, Delsuc F, Prest T L, Oliverio A M, Korpita T M, Alexiev A, Amato K R, Metcalf J L, Kowalewski M,2017. The effects of captivity on the mammalian gut microbiome[J]. Integrative and Comparative Biology,57(4):690‑704.DOI:10.1093/icb/icx090 . | |
| Mcnamara J M, Houston A I, Higginson A D,2015. Costs of foraging predispose animals to obesity‑related mortality when food is constantly abundant[J]. Public Library of Science ONE,10(11):e0141811. DOI:10.1371/journal.pone.0141811 . | |
| Metcalf J L, Song S J, Morton J T, Weiss S, Seguin‑Orlando A, Joly F, Feh C, Taberlet P, Coissac E, Amir A,2017. Evaluating the impact of domestication and captivity on the horse gut microbiome[J]. Scientific Reports,7(1):15497. DOI:10.1038/s41598-017-15375-9 . | |
| Modi S R, Collins J J, Relman D A,2014. Antibiotics and the gut microbiota[J]. Journal of Clinical Investigation,124(10):4212‑4218. DOI:10.1172/JCI72333 . | |
| Moustafa M A M, Chel H M, Thu M J, Bawm S, Htun L L, Win M M, Oo Z M, Ohsawa N, Lahdenperä M, Mohamed W M A, Ito K, Nonaka N, Nakao R, Katakura K,2021. Anthropogenic interferences lead to gut microbiome dysbiosis in Asian elephants and may alter adaptation processes to surrounding environments[J]. Scientific Reports,11(1):741. DOI:10.1038/s41598-020-80537-1 . | |
| Nelson T M, Rogers T L, Carlini A R, Brown M V,2013. Diet and phylogeny shape the gut microbiota of A ntarctic seals:A comparison of wild and captive animals[J]. Environmental Microbiology,15(4):1132‑1145.DOI:10.1111/1462-2920. 12022 . | |
| Ning Y, Qi J, Dobbins M T, Liang X, Wang J, Chen S, Ma J, Jiang G,2020. Comparative analysis of microbial community structure and function in the gut of wild and captive Amur tiger[J]. Frontiers in Microbiology,11:1665. DOI:10.3389/fmicb.2020.01665 . | |
| Nishida A H, Ochman H,2021. Captivity and the co‑diversification of great ape microbiomes[J]. Nature Communications,12(1):5632.DOI:10.1038/s41467-021-25732-y . | |
| Nobel Y R, Cox L M, Kirigin F F, Bokulich N A, Yamanishi S, Teitler I, Chung J, Sohn J, Barber C M, Goldfarb D S, Raju K, Abubucker S, Zhou Y, Ruiz V E, Li H, Mitreva M, Alekseyenko A V, Weinstock G M, Sodergren E, Blaser M J,2015. Metabolic and metagenomic outcomes from early‑life pulsed antibiotic treatment[J]. Nature Communications,6:7486. DOI:10.1038/ncomms8486 . | |
| O’Keefe S J, Li J V, Lahti L, Ou J, Carbonero F, Mohammed K, Posma J M, Kinross J, Wahl E, Ruder E, Vipperla K, Naidoo V, Mtshali L, Tims S, Puylaert P G, Delany J, Krasinskas A, Benefiel A C, Kaseb H O, Newton K, Nicholson J K, De Vos W M, Gaskins H R, Zoetendal E G,2015. Fat,fibre and cancer risk in African Americans and rural Africans[J]. Nature Communications,6:6342. DOI:10.1038/ncomms7342 . | |
| Owen D, Pemberton D,2005. Tasmanian devil:a unique and threatened animal[M].Allen & Unwin. | |
| Pal C, Bengtsson‑Palme J, Kristiansson E, Larsson D G,2016. The structure and diversity of human,animal and environmental resistomes[J]. Microbiome,4(1):54. DOI:10.1186/s40168- 016-0199-5 . | |
| PéChiné S, Hennequin C, Boursier C, Hoys S, Collignon A,2013. Immunization using GroEL decreases Clostridium difficile intestinal colonization[J]. Public Library of Science ONE,8(11):e81112. DOI:10.1371/journal.pone.0081112 . | |
| Pedroso A A, Batal A B, Lee M D,2016. Effect of in ovo administration of an adult‑derived microbiota on establishment of the intestinal microbiome in chickens[J]. American Journal of Veterinary Research,77(5):514‑526.DOI:10.2460/ajvr.77.5.514 . | |
| PéRez‑SáNchez T, Mora‑SáNchez B, BalcáZar J L,2018. Biological approaches for disease control in aquaculture:Advantages,limitations and challenges[J]. Trends in Microbiology,26(11):896‑903.DOI:10.1016/j.tim.2018.05.002 . | |
| Reardon S,2018. Faecal transplants could help preserve vulnerable species[J]. Nature,558(7709):173‑174.DOI:10.1038/d41586-018-05352-1 . | |
| Ridlon J M, Ikegawa S, Alves J M, Zhou B, Kobayashi A, Iida T, Mitamura K, Tanabe G, Serrano M, De Guzman A, Cooper P, Buck G A, Hylemon P B,2013. Clostridium scindens:a human gut microbe with a high potential to convert glucocorticoids into androgens[J]. Journal of Lipid Research,54(9):2437‑2449.DOI:10.1194/jlr.M038869 . | |
| Roth T L, Switzer A, Watanabe‑Chailland M, Bik E M, Relman D A, Romick‑Rosendale L E, Ollberding N J,2019. Reduced gut microbiome diversity and metabolome differences in rhinoceros species at risk for iron overload disorder[J]. Frontiers in Microbiology,10:2291. DOI:10.3389/fmicb.2019.02291 . | |
| Schmidt E, Mykytczuk N, Schulte‑Hostedde A I,2019. Effects of the captive and wild environment on diversity of the gut microbiome of deer mice(Peromyscus maniculatus)[J]. International Society for Microbial Ecology Journal,13(5):1293‑1305.DOI:10.1038/s41396-019-0345-8 . | |
| Schmidt V, Gomez‑Chiarri M, Roy C, Smith K, Amaral‑Zettler L,2017. Subtle microbiome manipulation using probiotics reduces antibiotic‑associated mortality in fish[J]. mSystems,2(6):e00133‑17. DOI:10.1128/mSystems. 00133-17 | |
| Schroeder B O, BäCkhed F,2016. Signals from the gut microbiota to distant organs in physiology and disease[J]. Nature Medicine,22(10):1079‑1089. DOI:10.1038/nm.4185 . | |
| Schwab C, Cristescu B, Northrup J M, Stenhouse G B, GäNzle M,2011. Diet and environment shape fecal bacterial microbiota composition and enteric pathogen load of grizzly bears[J]. Public Library of Science ONE,6(12):e27905. DOI:10.1371/journal.pone.0027905 . | |
| Sebaihia M, Wren B W, Mullany P,et al.,2006. The multidrug‑resistant human pathogen Clostridium difficile has a highly mobile,mosaic genome[J]. Nature Genetics,38(7):779‑786.DOI:10.1038/ng1830 . | |
| Sharon G, Garg N, Debelius J, Knight R, Dorrestein P C, Mazmanian S K,2014. Specialized metabolites from the microbiome in health and disease[J]. Cell Metabolism,20(5):719‑730.DOI:10.1016/j.cmet.2014.10.016 . | |
| Shome B R, Shome R, Bujarbaruah K M, Das A, Rahman H, Sharma G D, Dutta B K,2010. Investigation of haemorrhagic enteritis in pygmy hogs(Sus salvanius) from India[J]. Revue Scientifique Et Technique‑Office International Des Epizooties,29(3):687‑693. DOI:10.20506/rst.29.3.2010 . | |
| Silva R O S, De Oliveira JúNior C A, Blanc D S, Pereira S T, De Araujo M C R, Vasconcelos A, Lobato F C F,2018. Clostridioides difficile infection in dogs with chronic‑recurring diarrhea responsive to dietary changes[J]. Anaerobe,51:50‑53. DOI:10.1016/j.anaerobe.2018.03.011 . | |
| Smillie C S, Smith M B, Friedman J, Cordero O X, David L A, Aim E J,2011. Ecology drives a global network of gene exchange connecting the human microbiome[J]. Nature,480(7376):241‑244. DOI:10.1038/nature10571 . | |
| Sonnenburg E D, Smits S A, Tikhonov M, Higginbottom S K, Wingreen N S, Sonnenburg J L,2016. Diet‑induced extinctions in the gut microbiota compound over generations[J]. Nature,529(7585):212‑215.DOI:10.1038/nature16504 . | |
| Stoffel M A, Acevedo‑Whitehouse K, Morales‑DuráN N, Grosser S, Chakarov N, KrüGer O, Nichols H J, Elorriaga‑ Verplancken F R, Hoffman J I,2020. Early sexual dimorphism in the developing gut microbiome of northern elephant seals[J]. Molecular Ecology,29(11):2109‑2122. DOI:10.1111/mec.15385 . | |
| Suez J, Zmora N, Segal E, Elinav E,2019. The pros,cons,and many unknowns of probiotics[J]. Nature Medicine,25(5):716‑729. DOI:10.1038/s41591-019-0439-x . | |
| Sun N C, Lo F H, Chen B Y, Yu H Y, Liang C C, Lin C C, Chin S C, Li H F,2020.Digesta retention time and recovery rates of ants and termites in Chinese pangolins(Manis pentadactyla)[J]. Zoo Biology,39(3):168‑175. DOI:10.1002/zoo.21534 . | |
| Sun Y, Sun Y, Shi Z, Liu Z, Zhao C, Lu T, Gao H, Zhu F, Chen R, Zhang J, Pan R, Li B, Teng L, Guo S,2019. Gut microbiota of wild and captive alpine musk deer(Moschus chrysogaster)[J]. Frontiers in Microbiology,10:3156. DOI:10.3389/fmicb.2019.03156 . | |
| Sun Y, Zhang S, Nie Q, He H, Tan H, Geng F, Ji H, Hu J, Nie S,2023. Gut firmicutes:relationship with dietary fiber and role in host homeostasis[J]. Critical Reviews in Food Science and Nutrition,63(33):12073‑12088.DOI:10.1080/10408398.2022.2098249 . | |
| Terio K A, Munson L, Marker L, Aldridge B M, Solnick J V,2005.Comparison of Helicobacter spp. in Cheetahs(Acinonyx jubatus) with and without gastritis[J]. Journal of Clinical Microbiology,43(1):229‑234.DOI:10.1128/JCM.43.1.229- 234.2005 . | |
| Theriot C M, Koenigsknecht M J, Carlson P E Jr, Hatton G E, Nelson A M, Li B, Huffnagle G B, Li Z J, Young V B,2014. Antibiotic‑induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection[J]. Nature Communications,5:3114. DOI:10.1038/ncomms4114 . | |
| Trevelline B K, Fontaine S S, Hartup B K, Kohl K D,2019. Conservation biology needs a microbial renaissance:a call for the consideration of host‑associated microbiota in wildlife management practices[J]. Proceedings.Biological Sciences,286(1895):1471‑2954.DOI:10.1098/rspb.2018.2448 . | |
| Trevelline B K, Moeller A H,2022. Robustness of mammalian gut microbiota to humanization in captivity[J]. Frontiers in Ecology and Evolution,9:785089. DOI:10.3389/fevo.2021.785089 . | |
| Trotta A, Marinaro M, Sposato A, Galgano M, Ciccarelli S, Paci S, Corrente M,2021. Antimicrobial resistance in loggerhead sea turtles(Caretta caretta):a comparison between clinical and commensal bacterial isolates[J]. Animals(Basel),11(8). DOI:10.3390/ani11082435 . | |
| Tubbs C W, Moley L A, Ivy J A, Metrione L C, Laclaire S, Felton R G, Durrant B S, Milnes M R,2016. Estrogenicity of captive southern white rhinoceros diets and their association with fertility[J]. General And Comparative Endocrinology,238:32‑38. DOI:10.1016/j.ygcen.2016.05.004 . | |
| Turner J W Jr, Tolson P, Hamad N,2002. Remote assessment of stress in white rhinoceros(Ceratotherium simum) and black rhinoceros(Diceros bicornis) by measurement of adrenal steroids in feces[J]. Journal of Zoo And Wildlife Medicine,33(3):214‑221.DOI:10.1638/1042-7260 . | |
| Ushida K, Segawa T, Tsuchida S, Murata K,2016. Cecal bacterial communities in wild Japanese rock ptarmigans and captive Svalbard rock ptarmigans[J]. Journal of Veterinary Medical Science,78(2):251‑257. DOI:10.1292/jvms.15-0313 . | |
| Valles‑Colomer M, Falony G, Darzi Y, Tigchelaar E F, Wang J, Tito R Y, Schiweck C, Kurilshikov A, Joossens M, Wijmenga C, Claes S, Van Oudenhove L, Zhernakova A, Vieira‑Silva S, Raes J,2019,The neuroactive potential of the human gut microbiota in quality of life and depression[J]. Nature Microbiology,4(4):623‑632. DOI:10.1038/s41564-018- 0337-x . | |
| Van Den Bogaard A E, Stobberingh E E,2000. Epidemiology of resistance to antibiotics. Links between animals and humans[J]. International Journal of Antimicrobial Agents,14(4):327‑335. DOI:10.1016/S0924-8579(00)00145-X . | |
| Vitali F, Tortora K, Di Paola M, Bartolucci G, Menicatti M, De Filippo C, Caderni G,2022. Intestinal microbiota profiles in a genetic model of colon tumorigenesis correlates with colon cancer biomarkers[J]. Scientific Reports,12(1):1432. DOI:10.1038/s41598-022-05249-0 . | |
| VlčKová K, Gomez A, PetržElková K J, Whittier C A, Todd A F, Yeoman C J, Nelson K E, Wilson B A, Stumpf R M, Modrý D, White B A, Leigh S R,2016. Effect of antibiotic treatment on the gastrointestinal microbiome of free‑ranging western lowland gorillas(Gorilla g. gorilla)[J]. Microbial Ecology,72(4):943‑954.DOI:10.1007/s00248-016-0745-5 . | |
| VlčKová K, Shutt‑Phillips K, Heistermann M, PafčO B, PetržElková K J, Todd A, Modrý D, Nelson K E, Wilson B A, Stumpf R M, White B A, Leigh S R, Gomez A,2018. Impact of stress on the gut microbiome of free‑ranging western lowland gorillas[J]. Microbiology(Reading),164(1):40‑44. DOI:10.1099/mic.0.000587 . | |
| Voigt C C, Thalwitzer S, Melzheimer J, Blanc A‑S, Jago M, Wachter B,2014. The conflict between cheetahs and humans on Namibian farmland elucidated by stable isotope diet analysis[J]. Public Library of Science ONE,9(8):e101917. DOI:10.1371/journal.pone.0101917 . | |
| Wang X, Wang Z, Pan H, Qi J, Li D, Zhang L, Shen Y, Xiang Z, Li M,2021. Captivity influences the gut microbiome of Rhinopithecus roxellana [J]. Frontiers in Microbiology,12: 763022. DOI:10.3389/fmicb.2021.763022 . | |
| Wang Y, Kasper L H,2014. The role of microbiome in central nervous system disorders[J]. Brain Behavior & Immunity,38:1‑12.DOI:10.1016/j.bbi.2013.12.015 . | |
| Warne R W, Dallas J,2022. Microbiome mediation of animal life histories via metabolites and insulin‑like signalling[J]. Biological Reviews of the Cambridge Philosophical Society,97(3):1118‑1130.DOI:10.1111/brv.12833 . | |
| Wasimuddin, Menke S, Melzheimer J, Thalwitzer S, Heinrich S, Wachter B, Sommer S,2017. Gut microbiomes of free‑ranging and captive Namibian cheetahs:diversity,putative functions and occurrence of potential pathogens[J]. Molecular Ecology,26(20):5515‑5527.DOI:10.1111/mec.14278 . | |
| Weary D M, Droege P, Braithwaite V A,2017. Behavioral evidence of felt emotions:approaches,inferences,and refinements[J]. Advances in the Study of Behavior,49:27‑48. DOI:10.1016/bs.asb.2017.02.002 . | |
| Wells A, Terio K A, Ziccardi M H, Munson L,2004. The stress response to environmental change in captive cheetahs(Acinonyx jubatus)[J]. Journal of Zoo and Wildlife Medicine,35(1):8‑14. DOI:10.1638/02-084 . | |
| Wienemann T, Schmitt‑Wagner D, Meuser K, Segelbacher G, Schink B, Brune A, Berthold P,2011. The bacterial microbiota in the ceca of Capercaillie(Tetrao urogallus) differs between wild and captive birds[J]. Systematic and Applied Microbiology,34(7):542‑551. DOI:10.1016/j.syapm. 2011.06.003 . | |
| Wingfield J C,2013. Ecological processes and the ecology of stress:the impacts of abiotic environmental factors[J]. Functional Ecology,27(1):37‑44. DOI:10.2307/23480531 . | |
| Woodward E N, Walsh J L, Senn T E, Carey M P,2017. Positive social interaction offsets impact of low socioeconomic status on stress[J]. Journal of the National Medical Association,110(4):371‑377. DOI:10.1016/j.jnma.2017.07.006 . | |
| Wu X, Wei Q, Wang X, Shang Y, Zhang H,2022. Evolutionary and dietary relationships of wild mammals based on the gut microbiome[J]. Gene,808:145999. DOI:10.1016/j.gene. 2021.145999 . | |
| Wu X, Zhang H, Chen J, Shang S, Wei Q, Yan J, Tu X,2016. Comparison of the fecal microbiota of dholes high‑throughput Illumina sequencing of the V3‑V4 region of the 16S rRNA gene[J]. Applied Microbiology and Biotechnology,100:3577‑3586.DOI:10.1007/s00253-015-7257-y . | |
| Wu X, Zhang H, Chen J, Shang S, Yan J, Chen Y, Tang X, Zhang H,2017. Analysis and comparison of the wolf microbiome under different environmental factors using three different data of next generation sequencing[J]. Scientific Reports,7(1):11332. DOI:10.1038/s41598-017-11770-4 . | |
| Xiang Z F, Liang W B, Nie S G, Li M,2012. Diet and feeding behavior of Rhinopithecus brelichi at Yangaoping,Guizhou[J]. American Journal of Primatology,74(6):551‑560. | |
| Xiao Y, Xiao G, Liu H, Zhao X, Sun C, Tan X, Sun K, Liu S, Feng J,2019. Captivity causes taxonomic and functional convergence of gut microbial communities in bats[J].PeerJ,7:e6844. DOI:10.7717/peerj.6844 . | |
| Yan D, Hu D, Li K, Li B, Zeng X, Chen J, Li Y, Wronski T,2021. Effects of chronic stress on the fecal microbiome of Malayan pangolins(Manis javanica) rescued from the illegal wildlife trade[J]. Current Microbiology,78(3):1017‑1025. | |
| Yan J, Herzog J W, Tsang K, Brennan C A, Bower M A, Garrett W S, Sartor B R, Aliprantis A O, Charles J F,2016. Gut microbiota induce IGF‑1 and promote bone formation and growth[J]. Proceedings of the National Academy of Sciences of the United States of America,113(47):E7554‑E7563.DOI:10.1073/pnas. 1607235113 . | |
| Yang S, Liu Y, Yang N, Lan Y, Lan W, Feng J, Yue B, He M, Zhang L, Zhang A, Price M, Li J, Fan Z,2022. The gut microbiome and antibiotic resistome of chronic diarrhea rhesus macaques(Macaca mulatta)and its similarity to the human gut microbiome[J]. Microbiome,10(1):29. DOI:10.1186/s40168-021-01218-3 . | |
| Yeung F, Chen Y H, Lin J D, Leung J M, Mccauley C, Devlin J C, Hansen C, Cronkite A, Stephens Z, Drake‑Dunn C, Fulmer Y, Shopsin B, Ruggles K V, Round J L, Loke P, Graham A L, Cadwell K,2020. Altered immunity of laboratory mice in the natural environment is associated with fungal colonization[J]. Cell Host Microbe,27(5):809‑822. DOI:10.1016/j.chom.2020.02.015 . | |
| Zhang J, Guo Z, Xue Z, Sun Z, Zhang M, Wang L, Wang G, Wang F, Xu J, Cao H, Xu H, Lv Q, Zhong Z, Chen Y, Qimuge S, Menghe B, Zheng Y, Zhao L, Chen W, Zhang H,2015. A phylo‑functional core of gut microbiota in healthy young Chinese cohorts across lifestyles,geography and ethnicities[J]. The International Society for Microbial Ecology Journal,9(9):1979‑1990. DOI:10.1038/ismej.2015.11 . | |
| Zhang M Y, Wang X, Ayala J, Liu Y L, An J, Wang D H, Cai Z, Hou R, Cai K,2022a. Combined urine metabolomics and 16S rDNA sequencing analyses reveals physiological mechanism underlying decline in natural mating behavior of captive giant pandas[J]. Frontiers in Microbiology,13:906737. DOI:10.3389/fmicb.2022.906737 . | |
| Zhang M Y, Wang X Y, Zhang X H, Hou R,2022b. Urine metabolomics reveals the effects of confined environment on mating choice in adult male giant pandas[J]. Physiology & Behavior,249:113744. DOI:10.1016/j.physbeh.2022.113744 . | |
| Zhang N, Ju Z, Zuo T,2018. Time for food:the impact of diet on gut microbiota and human health[J]. Nutrition,51:80‑85. DOI:10.1016/j.nut.2017.12.005 . | |
| Zhang Y, Li X, Lu S, Guo H, Zhang Z, Zheng H, Zhang C, Zhang J, Wang K, Pei F,2024. Stress triggers gut dysbiosis via CRH‑CRHR1‑mitochondria pathway[J]. NPJ Biofilms & Microbiomes,10(1):93. DOI:10.1038/s41522-024-00571-z . | |
| Zhao G, Qi M, Wang Q, Hu C, Li X, Chen Y, Yang J, Yu H, Chen H, Guo A,2023. Gut microbiome variations in Rhinopithecus roxellanae caused by changes in the environment[J]. BMC Genomics,24(1):62. DOI:10.1186/s12864-023- 09142-6 . | |
| Zhu H, Zeng D, Wang Q, Wang N, Zeng B, Niu L, Ni X,2018. Diarrhea‑associated intestinal microbiota in captive sichuan golden snub‑nosed monkeys(Rhinopithecus roxellana)[J]. Microbes and Environments,33(3):249‑256.DOI:10.1264/jsme2.ME17163 . | |
| Zhu J, Zhong Z, Shi L, Huang L, Lin C, He Y, Xia X, Zhang T, Ding W, Yang Y,2024. Gut microbiota mediate early life stress‑induced social dysfunction and anxiety‑like behaviors by impairing amino acid transport at the gut[J]. Gut Microbes,16(1):2401939. DOI:10.1080/19490976.2024.2401939 . | |
| Zhu Z, Jiang S, Qi M, Liu H, Zhang S, Liu H, Zhou Z, Wang L, Wang C, Luo Y, Ren Z, Ma X, Cao S, Shen L, Wang Y, Fu H, Geng Y, He C, Gu X, Xie Y, Peng G, Zhong Z,2021. Prevalence and characterization of antibiotic resistance genes and integrons in Escherichia coli isolates from captive non‑human primates of 13 zoos in China[J]. The Science of the Total Environment,798:149268. DOI:10.1016/j.scitotenv.2021.149268 . | |
| 王伟,周越,田瑜,李俊生,2022. 自然保护地生物多样性保护研究进展[J]. 生物多样性,30(10):52‑65.DOI:10.17520/biods.2022459 . | |
| 朱永官,欧阳纬莹,吴楠,苏建强,乔敏,2015. 抗生素耐药性的来源与控制对策[J]. 中国科学院院刊,30(4):509‑516. DOI:10.16418/j.issn.1000-3045.2015.04.010 . | |
| 李云锋,邓军,张锦华,杨倩,2011. 枯草芽孢杆菌对仔猪小肠局部天然免疫及TLR表达的影响[J]. 畜牧兽医学报,42(4):562‑566. | |
| 吕向辉,乔继英,吴晓民,苏丽娜,2009. 主要危害麝类的化脓性、呼吸系统疾病及寄生虫病研究[J].经济动物学报,13(2):104‑107. DOI:10.13326/j.jea.2009.02.010 . | |
| 张小凤,2024. 添加抗生素对动物肠道健康的影响[J]. 畜牧兽医科技信息,(2):220‑222.DOI:10.3969/J.ISSN. 1671-6027.2024.02.077 . | |
| 张永宾,伊霞,王海锋,2015. 应激对圈养野生动物的影响及防治措施[J]. 黑龙江畜牧兽医,2015(9):229‑231.DOI:10.13881/j.cnki.hljxmsy.2015.0725 . | |
| 张亦瑶,王俊豪,郝海红,2023. 肠道微生物群与药物相互作用的研究进展[J]. 微生物学报,63(12):4536‑4554.DOI:10.13343/j.cnki.wsxb.20230334 . | |
| 周雪亮,周渊,朱强,张荣丽,2018. 幽门螺旋杆菌的研究进展[J]. 中国继续医学教育,10(33):101‑104.DOI:10.3969/j.issn.1674-9308.2018.33.042 . | |
| 高达,孙颖,姜瞻梅,刘飞,侯俊财,2019. 益生菌调节由抗生素导致肠道菌群失衡的研究进展[J]. 中国乳品工业,47(2):30‑33,47. | |
| 翟子豪,宋飏,王俊茵,张可俊,范振鑫,岳碧松,李静,2017. 峨眉山藏酋猴肠道微生物群落组成及其与圈养藏酋猴的比较[C]. 成都:第十三届全国野生动物生态与资源保护学术研讨会暨第六届中国西部动物学学术研讨会论文摘要集. |
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